HL_4V6M_052

3D structure

PDB id

4V6M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ribosome-SecYE complex in the membrane environment

Experimental method

ELECTRON MICROSCOPY

Resolution

7.1 Å

Loop

Sequence

CGGCGAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6M_052 not in the Motif Atlas

Homologous match to HL_9DFE_015

Geometric discrepancy: 0.2043

The information below is about HL_9DFE_015

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

4V6M|1|B8|C|487
4V6M|1|B8|G|488
4V6M|1|B8|G|489
4V6M|1|B8|C|490
4V6M|1|B8|G|491
4V6M|1|B8|A|492
4V6M|1|B8|G|493

Current chains

Chain B8

23S RIBOSOMAL RNA

Nearby chains

Chain AZ

Cell division protein FtsQ

Chain BA

Preprotein translocase secY subunit

Chain BS

50S ribosomal protein L22