3D structure

PDB id
4V6M (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the ribosome-SecYE complex in the membrane environment
Experimental method
ELECTRON MICROSCOPY
Resolution
7.1 Å

Loop

Sequence
UGUUGAAAAA
Length
10 nucleotides
Bulged bases
4V6M|1|B8|U|747, 4V6M|1|B8|A|751
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4V6M_059 not in the Motif Atlas
Homologous match to HL_4WF9_023
Geometric discrepancy: 0.0977
The information below is about HL_4WF9_023
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_88205.2
Basepair signature
cWW-cWS-tSW-F-F
Number of instances in this motif group
7

Unit IDs

4V6M|1|B8|U|744
4V6M|1|B8|G|745
4V6M|1|B8|U|746
4V6M|1|B8|U|747
4V6M|1|B8|G|748
4V6M|1|B8|A|749
4V6M|1|B8|A|750
4V6M|1|B8|A|751
4V6M|1|B8|A|752
4V6M|1|B8|A|753

Current chains

Chain B8
23S RIBOSOMAL RNA

Nearby chains

Chain AZ
Cell division protein FtsQ
Chain B0
50S ribosomal protein L32
Chain B2
50S ribosomal protein L34
Chain BD
50S ribosomal protein L3
Chain BE
50S ribosomal protein L4
Chain BS
50S ribosomal protein L22

Coloring options:


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