HL_4V6M_064

3D structure

PDB id

4V6M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ribosome-SecYE complex in the membrane environment

Experimental method

ELECTRON MICROSCOPY

Resolution

7.1 Å

Loop

Sequence

GAAACAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6M_064 not in the Motif Atlas

Homologous match to HL_5J7L_160

Geometric discrepancy: 0.2189

The information below is about HL_5J7L_160

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_42998.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

4V6M|1|B8|G|978
4V6M|1|B8|A|979
4V6M|1|B8|A|980
4V6M|1|B8|A|981
4V6M|1|B8|C|982
4V6M|1|B8|A|983
4V6M|1|B8|A|984
4V6M|1|B8|C|985

Current chains

Chain B8

23S RIBOSOMAL RNA

Nearby chains

Chain BQ

50S ribosomal protein L20

Chain BR

50S ribosomal protein L21

Chain BZ

50S ribosomal protein L30