HL_4V6M_070

3D structure

PDB id

4V6M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ribosome-SecYE complex in the membrane environment

Experimental method

ELECTRON MICROSCOPY

Resolution

7.1 Å

Loop

Sequence

GUUAAUC

Length

7 nucleotides

Bulged bases

4V6M|1|B8|U|1325, 4V6M|1|B8|U|1329

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6M_070 not in the Motif Atlas

Homologous match to HL_5J7L_166

Geometric discrepancy: 0.1642

The information below is about HL_5J7L_166

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_57176.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

4V6M|1|B8|G|1324
4V6M|1|B8|U|1325
4V6M|1|B8|U|1326
4V6M|1|B8|A|1327
4V6M|1|B8|A|1328
4V6M|1|B8|U|1329
4V6M|1|B8|C|1330

Current chains

Chain B8

23S RIBOSOMAL RNA

Nearby chains

Chain AZ

Cell division protein FtsQ

Chain BA

Preprotein translocase secY subunit

Chain BN

50S ribosomal protein L17

Chain BS

50S ribosomal protein L22