HL_4V6M_073

3D structure

PDB id

4V6M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ribosome-SecYE complex in the membrane environment

Experimental method

ELECTRON MICROSCOPY

Resolution

7.1 Å

Loop

Sequence

GCGACGGUUGUC

Length

12 nucleotides

Bulged bases

4V6M|1|B8|C|1454

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6M_073 not in the Motif Atlas

Geometric match to HL_8G9Z_001

Geometric discrepancy: 0.2301

The information below is about HL_8G9Z_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

4V6M|1|B8|G|1450
4V6M|1|B8|C|1451
4V6M|1|B8|G|1452
4V6M|1|B8|A|1453
4V6M|1|B8|C|1454
4V6M|1|B8|G|1455
4V6M|1|B8|G|1456
4V6M|1|B8|U|1457
4V6M|1|B8|U|1458
4V6M|1|B8|G|1459
4V6M|1|B8|U|1460
4V6M|1|B8|C|1461

Current chains

Chain B8

23S RIBOSOMAL RNA

Nearby chains

Chain BN

50S ribosomal protein L17