HL_4V6M_077

3D structure

PDB id

4V6M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ribosome-SecYE complex in the membrane environment

Experimental method

ELECTRON MICROSCOPY

Resolution

7.1 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

4V6M|1|B8|A|1616, 4V6M|1|B8|A|1618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6M_077 not in the Motif Atlas

Homologous match to HL_7RQB_040

Geometric discrepancy: 0.2333

The information below is about HL_7RQB_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64430.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

4V6M|1|B8|C|1612
4V6M|1|B8|G|1613
4V6M|1|B8|A|1614
4V6M|1|B8|C|1615
4V6M|1|B8|A|1616
4V6M|1|B8|C|1617
4V6M|1|B8|A|1618
4V6M|1|B8|G|1619

Current chains

Chain B8

23S RIBOSOMAL RNA

Nearby chains

Chain AZ

Cell division protein FtsQ

Chain B2

50S ribosomal protein L34

Chain BS

50S ribosomal protein L22