HL_4V6M_091

3D structure

PDB id

4V6M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ribosome-SecYE complex in the membrane environment

Experimental method

ELECTRON MICROSCOPY

Resolution

7.1 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

4V6M|1|B8|A|2268, 4V6M|1|B8|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6M_091 not in the Motif Atlas

Homologous match to HL_4WF9_050

Geometric discrepancy: 0.4326

The information below is about HL_4WF9_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91939.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

8

Unit IDs

4V6M|1|B8|C|2264
4V6M|1|B8|U|2265
4V6M|1|B8|A|2266
4V6M|1|B8|A|2267
4V6M|1|B8|A|2268
4V6M|1|B8|G|2269
4V6M|1|B8|A|2270
4V6M|1|B8|G|2271
4V6M|1|B8|U|2272
4V6M|1|B8|A|2273
4V6M|1|B8|A|2274
4V6M|1|B8|C|2275
4V6M|1|B8|G|2276

Current chains

Chain B8

23S RIBOSOMAL RNA

Nearby chains

Chain BM

50S ribosomal protein L16

Chain BW

50S ribosomal protein L27