HL_4V6N_006

3D structure

PDB id

4V6N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

UUUCGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6N_006 not in the Motif Atlas

Geometric match to HL_6CK5_001

Geometric discrepancy: 0.244

The information below is about HL_6CK5_001

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

49

Unit IDs

4V6N|1|AB|U|137
4V6N|1|AB|U|138
4V6N|1|AB|U|139
4V6N|1|AB|C|140
4V6N|1|AB|G|141
4V6N|1|AB|A|142

Current chains

Chain AB

23S ribosomal RNA

Nearby chains

Chain AV

50S ribosomal protein L23