4V6N Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_4V6N_001 | No text annotation | ||
| HL_4V6N_002 | Mini UNCG | ||
| HL_4V6N_003 | Pseudoknot with intercalation | ||
| HL_4V6N_004 | No text annotation | ||
| HL_4V6N_005 | No text annotation | ||
| HL_4V6N_006 | UNCG | ||
| HL_4V6N_007 | No text annotation | ||
| HL_4V6N_008 | No text annotation | ||
| HL_4V6N_009 | No text annotation | ||
| HL_4V6N_010 | No text annotation | ||
| HL_4V6N_011 | T-loop with 2 stacked bulged bases | ||
| HL_4V6N_012 | No text annotation | ||
| HL_4V6N_013 | T-loop with unstacked turn | ||
| HL_4V6N_014 | No text annotation | ||
| HL_4V6N_116 | No text annotation | ||
| HL_4V6N_015 | No text annotation | ||
| HL_4V6N_016 | GNRA | ||
| HL_4V6N_017 | GNRA | ||
| HL_4V6N_018 | No text annotation | ||
| HL_4V6N_019 | No text annotation | ||
| HL_4V6N_020 | No text annotation | ||
| HL_4V6N_021 | GNRA | ||
| HL_4V6N_022 | No text annotation | ||
| HL_4V6N_117 | No text annotation | ||
| HL_4V6N_023 | GNRA wlth tandem sheared | ||
| HL_4V6N_024 | No text annotation | ||
| HL_4V6N_025 | No text annotation | ||
| HL_4V6N_109 | No text annotation | ||
| HL_4V6N_026 | No text annotation | ||
| HL_4V6N_027 | Externally structured | ||
| HL_4V6N_028 | No text annotation | ||
| HL_4V6N_110 | GNRA | ||
| HL_4V6N_029 | No text annotation | ||
| HL_4V6N_030 | No text annotation | ||
| HL_4V6N_031 | No text annotation | ||
| HL_4V6N_032 | No text annotation | ||
| HL_4V6N_033 | GNRA | ||
| HL_4V6N_034 | T-loop with 2 stacked bulged bases | ||
| HL_4V6N_035 | Pseudoknot geometry with 3' bulge | ||
| HL_4V6N_036 | GNRA | ||
| HL_4V6N_037 | No text annotation | ||
| HL_4V6N_038 | No text annotation | ||
| HL_4V6N_039 | Pseudoknot geometry with 3' bulge | ||
| HL_4V6N_040 | UNCG | ||
| HL_4V6N_041 | No text annotation | ||
| HL_4V6N_042 | No text annotation | ||
| HL_4V6N_043 | GNRA | ||
| HL_4V6N_044 | No text annotation | ||
| HL_4V6N_045 | No text annotation | ||
| HL_4V6N_046 | No text annotation | ||
| HL_4V6N_047 | No text annotation | ||
| HL_4V6N_048 | No text annotation | ||
| HL_4V6N_049 | GNRA | ||
| HL_4V6N_050 | No text annotation | ||
| HL_4V6N_051 | No text annotation | ||
| HL_4V6N_052 | No text annotation | ||
| HL_4V6N_053 | Mini UNCG | ||
| HL_4V6N_054 | No text annotation | ||
| HL_4V6N_055 | No text annotation | ||
| HL_4V6N_056 | No text annotation | ||
| HL_4V6N_057 | tRNA anticodon loop | ||
| HL_4V6N_118 | Pseudoknot geometry | ||
| HL_4V6N_058 | GNRA | ||
| HL_4V6N_059 | GNRA | ||
| HL_4V6N_060 | No text annotation | ||
| HL_4V6N_111 | No text annotation | ||
| HL_4V6N_061 | No text annotation | ||
| HL_4V6N_062 | No text annotation | ||
| HL_4V6N_063 | No text annotation | ||
| HL_4V6N_064 | GNRA | ||
| HL_4V6N_065 | GNRA | ||
| HL_4V6N_112 | No text annotation | ||
| HL_4V6N_066 | No text annotation | ||
| HL_4V6N_119 | Ribsomal LSU H95 | ||
| HL_4V6N_067 | No text annotation | ||
| HL_4V6N_068 | No text annotation | ||
| HL_4V6N_069 | No text annotation | ||
| HL_4V6N_120 | No text annotation | ||
| HL_4V6N_070 | GNRA | ||
| HL_4V6N_071 | No text annotation | ||
| HL_4V6N_113 | No text annotation | ||
| HL_4V6N_072 | No text annotation | ||
| HL_4V6N_073 | GNRA | ||
| HL_4V6N_074 | GNRA | ||
| HL_4V6N_075 | No text annotation | ||
| HL_4V6N_076 | GNRA related | ||
| HL_4V6N_077 | GNRA | ||
| HL_4V6N_078 | No text annotation | ||
| HL_4V6N_079 | UNCG | ||
| HL_4V6N_080 | No text annotation | ||
| HL_4V6N_081 | UNCG | ||
| HL_4V6N_082 | No text annotation | ||
| HL_4V6N_083 | No text annotation | ||
| HL_4V6N_121 | GNRA variation | ||
| HL_4V6N_084 | No text annotation | ||
| HL_4V6N_085 | No text annotation | ||
| HL_4V6N_086 | GNRA | ||
| HL_4V6N_087 | No text annotation | ||
| HL_4V6N_088 | No text annotation | ||
| HL_4V6N_089 | GNRA | ||
| HL_4V6N_090 | GNRA | ||
| HL_4V6N_091 | No text annotation | ||
| HL_4V6N_092 | GNRA | ||
| HL_4V6N_093 | UNCG | ||
| HL_4V6N_094 | GNRA | ||
| HL_4V6N_095 | T-loop related | ||
| HL_4V6N_096 | No text annotation | ||
| HL_4V6N_097 | GNRA | ||
| HL_4V6N_098 | GNRA | ||
| HL_4V6N_099 | No text annotation | ||
| HL_4V6N_100 | No text annotation | ||
| HL_4V6N_101 | UNCG | ||
| HL_4V6N_102 | GNRA | ||
| HL_4V6N_103 | No text annotation | ||
| HL_4V6N_114 | No text annotation | ||
| HL_4V6N_104 | tRNA anticodon loop | ||
| HL_4V6N_105 | No text annotation | ||
| HL_4V6N_122 | T-loop with 2 stacked bulged bases | ||
| HL_4V6N_106 | No text annotation | ||
| HL_4V6N_107 | No text annotation | ||
| HL_4V6N_115 | No text annotation | ||
| HL_4V6N_123 | tRNA anticodon loop | ||
| HL_4V6N_108 | T-loop with 2 stacked bulged bases |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_4V6N_001 | Major groove intercalation | ||
| IL_4V6N_002 | No text annotation | ||
| IL_4V6N_003 | Minor groove platform | ||
| IL_4V6N_004 | Bacterial 5S Loop E | ||
| IL_4V6N_005 | No text annotation | ||
| IL_4V6N_006 | Single bulged A | ||
| IL_4V6N_007 | Minor groove platform | ||
| IL_4V6N_177 | No text annotation | ||
| IL_4V6N_008 | No text annotation | ||
| IL_4V6N_009 | Not an internal loop | ||
| IL_4V6N_178 | No text annotation | ||
| IL_4V6N_010 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_4V6N_011 | 7x6 Sarcin-Ricin; G-bulge | ||
| IL_4V6N_012 | No text annotation | ||
| IL_4V6N_013 | No text annotation | ||
| IL_4V6N_179 | No text annotation | ||
| IL_4V6N_014 | Isolated non-canonical cWW pair | ||
| IL_4V6N_015 | No text annotation | ||
| IL_4V6N_214 | No text annotation | ||
| IL_4V6N_016 | No text annotation | ||
| IL_4V6N_017 | Double sheared | ||
| IL_4V6N_018 | Isolated non-canonical cWW pair | ||
| IL_4V6N_019 | AAA cross-strand stack | ||
| IL_4V6N_020 | Tandem non-canonical cWW pairs | ||
| IL_4V6N_180 | Isolated non-canonical cWW pair | ||
| IL_4V6N_021 | tHW-tHW cross-strand stack | ||
| IL_4V6N_181 | Isolated near basepair | ||
| IL_4V6N_022 | Single bulged A | ||
| IL_4V6N_023 | Quadruple sheared | ||
| IL_4V6N_024 | Major groove platform | ||
| IL_4V6N_025 | Multiple bulged bases | ||
| IL_4V6N_026 | Single stack bend | ||
| IL_4V6N_027 | No text annotation | ||
| IL_4V6N_028 | Single stack bend | ||
| IL_4V6N_029 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | ||
| IL_4V6N_030 | Minor groove platform | ||
| IL_4V6N_031 | C-loop with bulged stacked A's | ||
| IL_4V6N_032 | Isolated non-canonical cWW pair | ||
| IL_4V6N_033 | Double sheared with non-canonical cWW | ||
| IL_4V6N_034 | Major groove intercalation | ||
| IL_4V6N_035 | No text annotation | ||
| IL_4V6N_036 | Single bulged C | ||
| IL_4V6N_037 | UAA/GAN | ||
| IL_4V6N_038 | Tandem non-canonical cWW pairs | ||
| IL_4V6N_215 | SSU/LSU pseudoknot | ||
| IL_4V6N_039 | Single bulged U | ||
| IL_4V6N_040 | No text annotation | ||
| IL_4V6N_041 | Isolated non-canonical cWW pair | ||
| IL_4V6N_042 | Tandem non-canonical cWW pairs | ||
| IL_4V6N_043 | Kink-turn | ||
| IL_4V6N_044 | No text annotation | ||
| IL_4V6N_045 | No text annotation | ||
| IL_4V6N_182 | No text annotation | ||
| IL_4V6N_216 | No text annotation | ||
| IL_4V6N_046 | Tandem non-canonical cWW pairs | ||
| IL_4V6N_217 | No text annotation | ||
| IL_4V6N_047 | No text annotation | ||
| IL_4V6N_048 | Kink-turn | ||
| IL_4V6N_049 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_4V6N_183 | 9x8 Sarcin-Ricin; G-bulge | ||
| IL_4V6N_050 | Major groove platform; stack outside cWW | ||
| IL_4V6N_218 | C-loop | ||
| IL_4V6N_051 | No text annotation | ||
| IL_4V6N_052 | UAA/GAN | ||
| IL_4V6N_053 | tSH-tHW-tHS | ||
| IL_4V6N_054 | No text annotation | ||
| IL_4V6N_219 | No text annotation | ||
| IL_4V6N_184 | No text annotation | ||
| IL_4V6N_055 | UAA/GAN | ||
| IL_4V6N_056 | Tandem non-canonical cWW pairs | ||
| IL_4V6N_057 | No text annotation | ||
| IL_4V6N_058 | No text annotation | ||
| IL_4V6N_059 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | ||
| IL_4V6N_185 | tSH-tHW-tHS | ||
| IL_4V6N_060 | No text annotation | ||
| IL_4V6N_061 | Single bulged A | ||
| IL_4V6N_062 | UAA/GAN variation | ||
| IL_4V6N_063 | No text annotation | ||
| IL_4V6N_064 | Isolated tWW turn | ||
| IL_4V6N_065 | Major groove platform; stack outside cWW | ||
| IL_4V6N_186 | No text annotation | ||
| IL_4V6N_066 | Intercalated tWH | ||
| IL_4V6N_067 | tSH-tSH-tHH-tHS | ||
| IL_4V6N_068 | 6x5 Sarcin-Ricin; G-bulge | ||
| IL_4V6N_069 | Triple sheared with non-canonical cWW | ||
| IL_4V6N_070 | Single bulged C | ||
| IL_4V6N_071 | Single bulged A | ||
| IL_4V6N_072 | Kink-turn related | ||
| IL_4V6N_073 | No text annotation | ||
| IL_4V6N_187 | No text annotation | ||
| IL_4V6N_074 | Major groove intercalation | ||
| IL_4V6N_188 | No text annotation | ||
| IL_4V6N_189 | No text annotation | ||
| IL_4V6N_075 | UAA/GAN related | ||
| IL_4V6N_076 | Multiple bulged bases | ||
| IL_4V6N_077 | No text annotation | ||
| IL_4V6N_078 | Major groove platform | ||
| IL_4V6N_079 | No text annotation | ||
| IL_4V6N_080 | No text annotation | ||
| IL_4V6N_190 | Single bulged U | ||
| IL_4V6N_081 | No text annotation | ||
| IL_4V6N_191 | No text annotation | ||
| IL_4V6N_082 | Isolated tHS basepair with bulges | ||
| IL_4V6N_083 | Tandem non-canonical cWW pairs | ||
| IL_4V6N_192 | Isolated non-canonical cWW pair | ||
| IL_4V6N_084 | Isolated non-canonical cWW pair | ||
| IL_4V6N_193 | Isolated non-canonical cWW pair | ||
| IL_4V6N_085 | No text annotation | ||
| IL_4V6N_194 | No text annotation | ||
| IL_4V6N_086 | Other IL | ||
| IL_4V6N_087 | No text annotation | ||
| IL_4V6N_195 | No text annotation | ||
| IL_4V6N_088 | No text annotation | ||
| IL_4V6N_089 | Single bulged U | ||
| IL_4V6N_090 | Double sheared | ||
| IL_4V6N_091 | No text annotation | ||
| IL_4V6N_196 | Major groove platform | ||
| IL_4V6N_092 | No text annotation | ||
| IL_4V6N_197 | No text annotation | ||
| IL_4V6N_093 | Major groove minor groove platform with extra cWW | ||
| IL_4V6N_094 | Double sheared with non-canonical cWW | ||
| IL_4V6N_095 | No text annotation | ||
| IL_4V6N_096 | Isolated non-canonical cWW with bulges | ||
| IL_4V6N_097 | No text annotation | ||
| IL_4V6N_098 | No text annotation | ||
| IL_4V6N_198 | Isolated near basepair | ||
| IL_4V6N_099 | No text annotation | ||
| IL_4V6N_100 | Single bulged A | ||
| IL_4V6N_101 | tSH-tHS-tHW | ||
| IL_4V6N_102 | Sarcin-Ricin target in LSU H95; G-bulge | ||
| IL_4V6N_103 | C-loop | ||
| IL_4V6N_104 | UAA/GAN related, with intercalation | ||
| IL_4V6N_105 | Multiple bulged bases | ||
| IL_4V6N_106 | UAA/GAN with extra cWW | ||
| IL_4V6N_107 | No text annotation | ||
| IL_4V6N_108 | Single bulged C | ||
| IL_4V6N_109 | No text annotation | ||
| IL_4V6N_199 | tHS double platform | ||
| IL_4V6N_110 | No text annotation | ||
| IL_4V6N_111 | Isolated non-canonical cWW pair | ||
| IL_4V6N_112 | Single bulged A | ||
| IL_4V6N_113 | No text annotation | ||
| IL_4V6N_114 | Minor groove platform | ||
| IL_4V6N_115 | Multiple bulged bases | ||
| IL_4V6N_116 | Minor groove platform with extra cWW | ||
| IL_4V6N_117 | Minor groove platform | ||
| IL_4V6N_118 | Single bulged G, near cWW | ||
| IL_4V6N_119 | Tandem non-canonical cWW pairs | ||
| IL_4V6N_200 | Isolated non-canonical cWW pair | ||
| IL_4V6N_120 | No text annotation | ||
| IL_4V6N_121 | Tandem non-canonical cWW pairs | ||
| IL_4V6N_220 | Isolated non-canonical cWW pair | ||
| IL_4V6N_122 | Isolated cWH basepair | ||
| IL_4V6N_123 | tWH-tWH-tHW-tHW | ||
| IL_4V6N_124 | No text annotation | ||
| IL_4V6N_221 | No text annotation | ||
| IL_4V6N_125 | Kink-turn with non-sequential stacking | ||
| IL_4V6N_126 | No text annotation | ||
| IL_4V6N_201 | No text annotation | ||
| IL_4V6N_127 | No text annotation | ||
| IL_4V6N_128 | Single bulged U | ||
| IL_4V6N_222 | C-loop | ||
| IL_4V6N_129 | C-loop with extra cWW pair | ||
| IL_4V6N_202 | No text annotation | ||
| IL_4V6N_223 | Single bulged G | ||
| IL_4V6N_130 | No text annotation | ||
| IL_4V6N_203 | No text annotation | ||
| IL_4V6N_131 | No text annotation | ||
| IL_4V6N_132 | No text annotation | ||
| IL_4V6N_204 | 6x5 Sarcin-Ricin; G-bulge | ||
| IL_4V6N_133 | No text annotation | ||
| IL_4V6N_134 | No text annotation | ||
| IL_4V6N_135 | No text annotation | ||
| IL_4V6N_224 | Minor groove platform with extra cWW | ||
| IL_4V6N_136 | Single stack bend | ||
| IL_4V6N_137 | SSU/LSU pseudoknot | ||
| IL_4V6N_138 | Kink-turn related | ||
| IL_4V6N_139 | No text annotation | ||
| IL_4V6N_140 | tSH-tHW-tHS | ||
| IL_4V6N_141 | Major groove platform | ||
| IL_4V6N_142 | Major groove minor groove platform; mini C-loop | ||
| IL_4V6N_143 | No text annotation | ||
| IL_4V6N_144 | Major groove platform; stack outside cWW | ||
| IL_4V6N_145 | Single stack bend | ||
| IL_4V6N_146 | No text annotation | ||
| IL_4V6N_225 | Tandem non-canonical cWW pairs | ||
| IL_4V6N_147 | No text annotation | ||
| IL_4V6N_148 | Kink-turn | ||
| IL_4V6N_205 | Isolated near basepair | ||
| IL_4V6N_149 | Left turn | ||
| IL_4V6N_150 | tSH-tHW-tHS | ||
| IL_4V6N_151 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | ||
| IL_4V6N_206 | Single bulged A | ||
| IL_4V6N_152 | Isolated non-canonical cWW pair | ||
| IL_4V6N_153 | Single bulged G | ||
| IL_4V6N_154 | Minor groove platform | ||
| IL_4V6N_155 | Minor groove platform | ||
| IL_4V6N_156 | Minor groove platform | ||
| IL_4V6N_157 | Single stack bend | ||
| IL_4V6N_207 | No text annotation | ||
| IL_4V6N_158 | No text annotation | ||
| IL_4V6N_208 | Isolated cWS basepair | ||
| IL_4V6N_159 | Minor groove platform | ||
| IL_4V6N_160 | Single bulged U | ||
| IL_4V6N_161 | Isolated non-canonical cWW pair | ||
| IL_4V6N_162 | No text annotation | ||
| IL_4V6N_163 | Minor groove platform | ||
| IL_4V6N_164 | No text annotation | ||
| IL_4V6N_165 | No text annotation | ||
| IL_4V6N_166 | 180 degree turn | ||
| IL_4V6N_167 | Double sheared with non-canonical cWW | ||
| IL_4V6N_168 | Quadruple sheared | ||
| IL_4V6N_169 | No text annotation | ||
| IL_4V6N_170 | No text annotation | ||
| IL_4V6N_209 | Isolated non-canonical cWW pair | ||
| IL_4V6N_171 | No text annotation | ||
| IL_4V6N_210 | No text annotation | ||
| IL_4V6N_226 | Isolated non-canonical cWW pair | ||
| IL_4V6N_172 | Tandem non-canonical cWW pairs | ||
| IL_4V6N_211 | Partly complementary | ||
| IL_4V6N_212 | No text annotation | ||
| IL_4V6N_173 | No text annotation | ||
| IL_4V6N_174 | Triple sheared related | ||
| IL_4V6N_213 | No text annotation | ||
| IL_4V6N_175 | No text annotation | ||
| IL_4V6N_227 | No text annotation | ||
| IL_4V6N_176 | No text annotation |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_4V6N_001 | No text annotation | ||
| J3_4V6N_002 | No text annotation | ||
| J3_4V6N_027 | No text annotation | ||
| J3_4V6N_028 | No text annotation | ||
| J3_4V6N_029 | No text annotation | ||
| J3_4V6N_003 | No text annotation | ||
| J3_4V6N_004 | No text annotation | ||
| J3_4V6N_005 | No text annotation | ||
| J3_4V6N_006 | No text annotation | ||
| J3_4V6N_007 | No text annotation | ||
| J3_4V6N_008 | No text annotation | ||
| J3_4V6N_009 | No text annotation | ||
| J3_4V6N_030 | No text annotation | ||
| J3_4V6N_010 | Kink-turn 3-way junction | ||
| J3_4V6N_011 | No text annotation | ||
| J3_4V6N_031 | No text annotation | ||
| J3_4V6N_012 | No text annotation | ||
| J3_4V6N_013 | No text annotation | ||
| J3_4V6N_014 | No text annotation | ||
| J3_4V6N_032 | No text annotation | ||
| J3_4V6N_015 | No text annotation | ||
| J3_4V6N_033 | No text annotation | ||
| J3_4V6N_016 | No text annotation | ||
| J3_4V6N_034 | No text annotation | ||
| J3_4V6N_017 | No text annotation | ||
| J3_4V6N_018 | No text annotation | ||
| J3_4V6N_035 | No text annotation | ||
| J3_4V6N_019 | No text annotation | ||
| J3_4V6N_020 | No text annotation | ||
| J3_4V6N_021 | No text annotation | ||
| J3_4V6N_036 | No text annotation | ||
| J3_4V6N_022 | No text annotation | ||
| J3_4V6N_039 | No text annotation | ||
| J3_4V6N_023 | No text annotation | ||
| J3_4V6N_024 | No text annotation | ||
| J3_4V6N_037 | No text annotation | ||
| J3_4V6N_025 | No text annotation | ||
| J3_4V6N_038 | No text annotation | ||
| J3_4V6N_026 | No text annotation | ||
| J4_4V6N_001 | No text annotation | ||
| J4_4V6N_017 | No text annotation | ||
| J4_4V6N_002 | No text annotation | ||
| J4_4V6N_003 | No text annotation | ||
| J4_4V6N_018 | No text annotation | ||
| J4_4V6N_004 | No text annotation | ||
| J4_4V6N_005 | No text annotation | ||
| J4_4V6N_006 | No text annotation | ||
| J4_4V6N_007 | No text annotation | ||
| J4_4V6N_008 | No text annotation | ||
| J4_4V6N_019 | No text annotation | ||
| J4_4V6N_009 | No text annotation | ||
| J4_4V6N_010 | No text annotation | ||
| J4_4V6N_011 | No text annotation | ||
| J4_4V6N_020 | No text annotation | ||
| J4_4V6N_012 | No text annotation | ||
| J4_4V6N_013 | No text annotation | ||
| J4_4V6N_014 | No text annotation | ||
| J4_4V6N_015 | No text annotation | ||
| J4_4V6N_021 | No text annotation | ||
| J4_4V6N_016 | tRNA junction | ||
| J5_4V6N_001 | No text annotation | ||
| J5_4V6N_010 | No text annotation | ||
| J5_4V6N_002 | No text annotation | ||
| J5_4V6N_003 | No text annotation | ||
| J5_4V6N_004 | No text annotation | ||
| J5_4V6N_005 | No text annotation | ||
| J5_4V6N_011 | No text annotation | ||
| J5_4V6N_006 | No text annotation | ||
| J5_4V6N_007 | No text annotation | ||
| J5_4V6N_008 | No text annotation | ||
| J5_4V6N_009 | No text annotation | ||
| J6_4V6N_001 | No text annotation | ||
| J7_4V6N_003 | No text annotation | ||
| J7_4V6N_001 | No text annotation | ||
| J7_4V6N_004 | No text annotation | ||
| J7_4V6N_002 | No text annotation |
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