HL_4V6N_008

3D structure

PDB id

4V6N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

4V6N|1|AB|A|196

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6N_008 not in the Motif Atlas

Homologous match to HL_7RQB_006

Geometric discrepancy: 0.2671

The information below is about HL_7RQB_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_06192.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

14

Unit IDs

4V6N|1|AB|G|194
4V6N|1|AB|A|195
4V6N|1|AB|A|196
4V6N|1|AB|A|197
4V6N|1|AB|C|198
4V6N|1|AB|A|199
4V6N|1|AB|U|200
4V6N|1|AB|C|201

Current chains

Chain AB

23S ribosomal RNA

Nearby chains

Chain AN

50S ribosomal protein L15

Chain AZ

50S ribosomal protein L28