HL_4V6N_013

3D structure

PDB id

4V6N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

GUGACAGCC

Length

9 nucleotides

Bulged bases

4V6N|1|AB|G|329

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6N_013 not in the Motif Atlas

Homologous match to HL_7RQB_012

Geometric discrepancy: 0.2206

The information below is about HL_7RQB_012

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_08002.9

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

19

Unit IDs

4V6N|1|AB|G|327
4V6N|1|AB|U|328
4V6N|1|AB|G|329
4V6N|1|AB|A|330
4V6N|1|AB|C|331
4V6N|1|AB|A|332
4V6N|1|AB|G|333
4V6N|1|AB|C|334
4V6N|1|AB|C|335

Current chains

Chain AB

23S ribosomal RNA

Nearby chains

Chain AF

50S ribosomal protein L4

Chain AW

50S ribosomal protein L24