HL_4V6N_016

3D structure

PDB id

4V6N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

CGUGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6N_016 not in the Motif Atlas

Homologous match to HL_7RQB_015

Geometric discrepancy: 0.3068

The information below is about HL_7RQB_015

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

4V6N|1|AB|C|462
4V6N|1|AB|G|463
4V6N|1|AB|U|464
4V6N|1|AB|G|465
4V6N|1|AB|A|466
4V6N|1|AB|G|467

Current chains

Chain AB

23S ribosomal RNA

Nearby chains

Chain A5

50S ribosomal protein L34

Chain AF

50S ribosomal protein L4

Chain AV

50S ribosomal protein L23