HL_4V6N_022

3D structure

PDB id

4V6N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

CUUAACUGG

Length

9 nucleotides

Bulged bases

4V6N|1|AB|C|645

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6N_022 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.3233

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

4V6N|1|AB|C|640
4V6N|1|AB|U|641
4V6N|1|AB|U|642
4V6N|1|AB|A|643
4V6N|1|AB|A|644
4V6N|1|AB|C|645
4V6N|1|AB|U|646
4V6N|1|AB|G|647
4V6N|1|AB|G|648

Current chains

Chain AB

23S ribosomal RNA

Nearby chains

Chain A4

50S ribosomal protein L33

Chain A6

50S ribosomal protein L35

Chain AN

50S ribosomal protein L15