HL_4V6N_025

3D structure

PDB id

4V6N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

UGAAAGG

Length

7 nucleotides

Bulged bases

4V6N|1|AB|A|781, 4V6N|1|AB|G|784

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6N_025 not in the Motif Atlas

Homologous match to HL_7RQB_024

Geometric discrepancy: 0.2954

The information below is about HL_7RQB_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74322.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

4

Unit IDs

4V6N|1|AB|U|779
4V6N|1|AB|G|780
4V6N|1|AB|A|781
4V6N|1|AB|A|782
4V6N|1|AB|A|783
4V6N|1|AB|G|784
4V6N|1|AB|G|785

Current chains

Chain AB

23S ribosomal RNA

Nearby chains

Chain AD

50S ribosomal protein L2