HL_4V6N_028

3D structure

PDB id

4V6N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

G(PSU)GCUAACGU

Length

10 nucleotides

Bulged bases

4V6N|1|AB|U|958, 4V6N|1|AB|C|961

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6N_028 not in the Motif Atlas

Homologous match to HL_5J7L_159

Geometric discrepancy: 0.219

The information below is about HL_5J7L_159

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6N|1|AB|G|954
4V6N|1|AB|PSU|955
4V6N|1|AB|G|956
4V6N|1|AB|C|957
4V6N|1|AB|U|958
4V6N|1|AB|A|959
4V6N|1|AB|A|960
4V6N|1|AB|C|961
4V6N|1|AB|G|962
4V6N|1|AB|U|963

Current chains

Chain AB

23S ribosomal RNA

Nearby chains

Chain AA

5S ribosomal RNA; 5S rRNA

Chain AO

50S ribosomal protein L16