HL_4V6N_037

3D structure

PDB id

4V6N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

4V6N|1|AB|U|1396, 4V6N|1|AB|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6N_037 not in the Motif Atlas

Homologous match to HL_7A0S_035

Geometric discrepancy: 0.5362

The information below is about HL_7A0S_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81545.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

4V6N|1|AB|G|1389
4V6N|1|AB|U|1390
4V6N|1|AB|U|1391
4V6N|1|AB|A|1392
4V6N|1|AB|A|1393
4V6N|1|AB|U|1394
4V6N|1|AB|A|1395
4V6N|1|AB|U|1396
4V6N|1|AB|U|1397
4V6N|1|AB|C|1398

Current chains

Chain AB

23S ribosomal RNA

Nearby chains

Chain AV

50S ribosomal protein L23