HL_4V6N_038

3D structure

PDB id

4V6N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

GCGACGGUUGUC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6N_038 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.2065

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.2

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

4V6N|1|AB|G|1450
4V6N|1|AB|C|1451
4V6N|1|AB|G|1452
4V6N|1|AB|A|1453
4V6N|1|AB|C|1454
4V6N|1|AB|G|1455
4V6N|1|AB|G|1456
4V6N|1|AB|U|1457
4V6N|1|AB|U|1458
4V6N|1|AB|G|1459
4V6N|1|AB|U|1460
4V6N|1|AB|C|1461

Current chains

Chain AB

23S ribosomal RNA

Nearby chains

Chain AP

50S ribosomal protein L17