HL_4V6N_053

3D structure

PDB id

4V6N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

ACGCCAGU

Length

8 nucleotides

Bulged bases

4V6N|1|AB|C|2145

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6N_053 not in the Motif Atlas

Geometric match to HL_4LFB_005

Geometric discrepancy: 0.2764

The information below is about HL_4LFB_005

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_48778.2

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

4V6N|1|AB|A|2142
4V6N|1|AB|C|2143
4V6N|1|AB|G|2144
4V6N|1|AB|C|2145
4V6N|1|AB|C|2146
4V6N|1|AB|A|2147
4V6N|1|AB|G|2148
4V6N|1|AB|U|2149

Current chains

Chain AB

23S ribosomal RNA

Nearby chains

Chain AC

50S ribosomal protein L1

Chain BN

30S ribosomal protein S11