HL_4V6N_065

3D structure

PDB id

4V6N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6N_065 not in the Motif Atlas

Geometric match to HL_3SUX_002

Geometric discrepancy: 0.1209

The information below is about HL_3SUX_002

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

4V6N|1|AB|C|2658
4V6N|1|AB|G|2659
4V6N|1|AB|A|2660
4V6N|1|AB|G|2661
4V6N|1|AB|A|2662
4V6N|1|AB|G|2663

Current chains

Chain AB

23S ribosomal RNA

Nearby chains

Chain AH

50S ribosomal protein L6