HL_4V6N_066

3D structure

PDB id

4V6N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

AUGCCAAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6N_066 not in the Motif Atlas

Geometric match to HL_3R4F_002

Geometric discrepancy: 0.2933

The information below is about HL_3R4F_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_38592.1

Basepair signature

cWW-cWW-F-F

Number of instances in this motif group

2

Unit IDs

4V6N|1|AB|A|2700
4V6N|1|AB|U|2701
4V6N|1|AB|G|2702
4V6N|1|AB|C|2703
4V6N|1|AB|C|2704
4V6N|1|AB|A|2705
4V6N|1|AB|A|2706
4V6N|1|AB|U|2707

Current chains

Chain AB

23S ribosomal RNA

Nearby chains

Chain AP

50S ribosomal protein L17