HL_4V6N_086

3D structure

PDB id

4V6N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

CGAAGG

Length

6 nucleotides

Bulged bases

4V6N|1|BA|A|728

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6N_086 not in the Motif Atlas

Homologous match to HL_4LFB_016

Geometric discrepancy: 0.5181

The information below is about HL_4LFB_016

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

4V6N|1|BA|C|726
4V6N|1|BA|G|727
4V6N|1|BA|A|728
4V6N|1|BA|A|729
4V6N|1|BA|G|730
4V6N|1|BA|G|731

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BR

30S ribosomal protein S15

Chain BU

30S ribosomal protein S18

Chain BX

30S ribosomal protein S21