HL_4V6N_103

3D structure

PDB id

4V6N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

CAA(H2U)(H2U)GG(H2U)AG

Length

10 nucleotides

Bulged bases

4V6N|1|BB|G|18, 4V6N|1|BB|G|19

QA status

Modified nucleotides: H2U

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6N_103 not in the Motif Atlas

Homologous match to HL_2AKE_001

Geometric discrepancy: 0.3816

The information below is about HL_2AKE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27981.1

Basepair signature

cWW-cWS

Number of instances in this motif group

2

Unit IDs

4V6N|1|BB|C|13
4V6N|1|BB|A|14
4V6N|1|BB|A|15
4V6N|1|BB|H2U|16
4V6N|1|BB|H2U|17
4V6N|1|BB|G|18
4V6N|1|BB|G|19
4V6N|1|BB|H2U|20
4V6N|1|BB|A|21
4V6N|1|BB|G|22

Current chains

Chain BB

A site tRNA

Nearby chains

Chain AB

Large subunit ribosomal RNA; LSU rRNA