HL_4V6N_111

3D structure

PDB id

4V6N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

GAGUUCAUAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6N|1|AB|G|2470
4V6N|1|AB|A|2471
4V6N|1|AB|G|2472
4V6N|1|AB|U|2473
4V6N|1|AB|U|2474
4V6N|1|AB|C|2475
4V6N|1|AB|A|2476
4V6N|1|AB|U|2477
4V6N|1|AB|A|2478
4V6N|1|AB|U|2479
4V6N|1|AB|C|2480

Current chains

Chain AB

23S ribosomal RNA

Nearby chains

Chain A7

50S ribosomal protein L36

Chain AH

50S ribosomal protein L6

Chain AO

50S ribosomal protein L16

Chain BB

Transfer RNA; tRNA