HL_4V6N_123
3D structure
- PDB id
- 4V6N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 12.1 Å
Loop
- Sequence
- G(OMC)UCAUAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V6N_123 not in the Motif Atlas
- Homologous match to HL_4TUE_034
- Geometric discrepancy: 0.2127
- The information below is about HL_4TUE_034
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.6
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 51
Unit IDs
4V6N|1|BD|G|32
4V6N|1|BD|OMC|33
4V6N|1|BD|U|34
4V6N|1|BD|C|35
4V6N|1|BD|A|36
4V6N|1|BD|U|37
4V6N|1|BD|A|38
4V6N|1|BD|A|39
4V6N|1|BD|C|40
Current chains
- Chain BD
- P site tRNA
Nearby chains
- Chain BA
- Small subunit ribosomal RNA; SSU rRNA
- Chain BC
- mRNA
- Chain BL
- 30S ribosomal protein S9
- Chain BP
- 30S ribosomal protein S13
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