HL_4V6O_032

3D structure

PDB id

4V6O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4a of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

14.7 Å

Loop

Sequence

G(2MG)G(MA6)(MA6)C

Length

6 nucleotides

Bulged bases

4V6O|1|AA|G|1517

QA status

Modified nucleotides: 2MG, MA6

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6O_032 not in the Motif Atlas

Homologous match to HL_4LFB_032

Geometric discrepancy: 0.2773

The information below is about HL_4LFB_032

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

4V6O|1|AA|G|1515
4V6O|1|AA|2MG|1516
4V6O|1|AA|G|1517
4V6O|1|AA|MA6|1518
4V6O|1|AA|MA6|1519
4V6O|1|AA|C|1520

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain BB

Large subunit ribosomal RNA; LSU rRNA