4V6O Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
HL_4V6O_001 | No text annotation | ||
HL_4V6O_002 | No text annotation | ||
HL_4V6O_116 | No text annotation | ||
HL_4V6O_003 | GNRA | ||
HL_4V6O_004 | GNRA | ||
HL_4V6O_005 | UNCG | ||
HL_4V6O_006 | GNRA related | ||
HL_4V6O_007 | GNRA | ||
HL_4V6O_008 | No text annotation | ||
HL_4V6O_009 | UNCG | ||
HL_4V6O_010 | GNRA | ||
HL_4V6O_011 | UNCG | ||
HL_4V6O_012 | No text annotation | ||
HL_4V6O_013 | No text annotation | ||
HL_4V6O_109 | GNRA variation | ||
HL_4V6O_014 | No text annotation | ||
HL_4V6O_015 | No text annotation | ||
HL_4V6O_016 | GNRA | ||
HL_4V6O_017 | No text annotation | ||
HL_4V6O_018 | No text annotation | ||
HL_4V6O_019 | GNRA | ||
HL_4V6O_020 | GNRA | ||
HL_4V6O_021 | No text annotation | ||
HL_4V6O_022 | GNRA | ||
HL_4V6O_023 | UNCG | ||
HL_4V6O_024 | GNRA | ||
HL_4V6O_025 | T-loop related | ||
HL_4V6O_026 | No text annotation | ||
HL_4V6O_027 | GNRA | ||
HL_4V6O_028 | UNCG variation | ||
HL_4V6O_029 | T-loop with 3 stacked bulged bases | ||
HL_4V6O_030 | No text annotation | ||
HL_4V6O_110 | No text annotation | ||
HL_4V6O_031 | UNCG | ||
HL_4V6O_032 | GNRA | ||
HL_4V6O_033 | No text annotation | ||
HL_4V6O_034 | tRNA anticodon loop | ||
HL_4V6O_035 | No text annotation | ||
HL_4V6O_117 | T-loop with 2 stacked bulged bases | ||
HL_4V6O_036 | No text annotation | ||
HL_4V6O_037 | tRNA anticodon loop | ||
HL_4V6O_038 | T-loop with 2 stacked bulged bases | ||
HL_4V6O_111 | No text annotation | ||
HL_4V6O_039 | No text annotation | ||
HL_4V6O_040 | Mini UNCG | ||
HL_4V6O_041 | No text annotation | ||
HL_4V6O_112 | No text annotation | ||
HL_4V6O_042 | No text annotation | ||
HL_4V6O_043 | No text annotation | ||
HL_4V6O_044 | No text annotation | ||
HL_4V6O_045 | No text annotation | ||
HL_4V6O_113 | No text annotation | ||
HL_4V6O_046 | No text annotation | ||
HL_4V6O_047 | No text annotation | ||
HL_4V6O_048 | No text annotation | ||
HL_4V6O_049 | T-loop with 2 stacked bulged bases | ||
HL_4V6O_050 | No text annotation | ||
HL_4V6O_051 | T-loop with unstacked turn | ||
HL_4V6O_052 | No text annotation | ||
HL_4V6O_118 | No text annotation | ||
HL_4V6O_053 | No text annotation | ||
HL_4V6O_054 | GNRA | ||
HL_4V6O_055 | GNRA | ||
HL_4V6O_056 | No text annotation | ||
HL_4V6O_057 | No text annotation | ||
HL_4V6O_058 | No text annotation | ||
HL_4V6O_059 | GNRA | ||
HL_4V6O_060 | No text annotation | ||
HL_4V6O_061 | GNRA wlth tandem sheared | ||
HL_4V6O_062 | No text annotation | ||
HL_4V6O_063 | UNCG variation | ||
HL_4V6O_064 | No text annotation | ||
HL_4V6O_065 | Externally structured | ||
HL_4V6O_066 | No text annotation | ||
HL_4V6O_067 | No text annotation | ||
HL_4V6O_068 | No text annotation | ||
HL_4V6O_069 | No text annotation | ||
HL_4V6O_070 | Externally structured | ||
HL_4V6O_071 | GNRA | ||
HL_4V6O_072 | T-loop with 2 stacked bulged bases | ||
HL_4V6O_073 | Mini UNCG | ||
HL_4V6O_074 | GNRA | ||
HL_4V6O_075 | No text annotation | ||
HL_4V6O_076 | No text annotation | ||
HL_4V6O_077 | No text annotation | ||
HL_4V6O_078 | UNCG | ||
HL_4V6O_079 | No text annotation | ||
HL_4V6O_080 | No text annotation | ||
HL_4V6O_081 | GNRA | ||
HL_4V6O_082 | UNCG | ||
HL_4V6O_083 | Mini UNCG related | ||
HL_4V6O_084 | No text annotation | ||
HL_4V6O_085 | No text annotation | ||
HL_4V6O_086 | No text annotation | ||
HL_4V6O_087 | GNRA | ||
HL_4V6O_088 | No text annotation | ||
HL_4V6O_089 | No text annotation | ||
HL_4V6O_114 | No text annotation | ||
HL_4V6O_090 | No text annotation | ||
HL_4V6O_091 | No text annotation | ||
HL_4V6O_092 | No text annotation | ||
HL_4V6O_119 | No text annotation | ||
HL_4V6O_093 | No text annotation | ||
HL_4V6O_094 | No text annotation | ||
HL_4V6O_120 | No text annotation | ||
HL_4V6O_095 | Pseudoknot geometry | ||
HL_4V6O_096 | GNRA | ||
HL_4V6O_097 | GNRA | ||
HL_4V6O_098 | No text annotation | ||
HL_4V6O_099 | UNCG variation | ||
HL_4V6O_115 | tRNA anticodon loop | ||
HL_4V6O_100 | No text annotation | ||
HL_4V6O_101 | No text annotation | ||
HL_4V6O_102 | GNRA | ||
HL_4V6O_103 | GNRA | ||
HL_4V6O_104 | No text annotation | ||
HL_4V6O_121 | Ribsomal LSU H95 | ||
HL_4V6O_105 | No text annotation | ||
HL_4V6O_106 | No text annotation | ||
HL_4V6O_107 | No text annotation | ||
HL_4V6O_108 | GNRA |
Valid loops
No loops found
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
IL_4V6O_001 | Isolated non-canonical cWW pair | ||
IL_4V6O_002 | Isolated non-canonical cWW pair | ||
IL_4V6O_219 | Single bulged A | ||
IL_4V6O_003 | No text annotation | ||
IL_4V6O_004 | Minor groove platform | ||
IL_4V6O_005 | Multiple bulged bases | ||
IL_4V6O_006 | Minor groove platform with extra cWW | ||
IL_4V6O_007 | Minor groove platform | ||
IL_4V6O_220 | No text annotation | ||
IL_4V6O_008 | No text annotation | ||
IL_4V6O_009 | No text annotation | ||
IL_4V6O_180 | Isolated non-canonical cWW pair | ||
IL_4V6O_010 | No text annotation | ||
IL_4V6O_011 | Tandem non-canonical cWW pairs | ||
IL_4V6O_221 | Isolated non-canonical cWW pair | ||
IL_4V6O_012 | Isolated cWH basepair | ||
IL_4V6O_013 | No text annotation | ||
IL_4V6O_181 | tWH-tWH-tHW-tHW | ||
IL_4V6O_014 | Multiple bulged bases | ||
IL_4V6O_015 | Kink-turn with non-sequential stacking | ||
IL_4V6O_222 | No text annotation | ||
IL_4V6O_016 | No text annotation | ||
IL_4V6O_182 | No text annotation | ||
IL_4V6O_017 | No text annotation | ||
IL_4V6O_183 | Single bulged U | ||
IL_4V6O_018 | C-loop | ||
IL_4V6O_223 | Single bulged G | ||
IL_4V6O_019 | Isolated non-canonical cWW with bulges | ||
IL_4V6O_184 | No text annotation | ||
IL_4V6O_020 | No text annotation | ||
IL_4V6O_021 | Other IL | ||
IL_4V6O_022 | tSH-tHW-tWW | ||
IL_4V6O_023 | No text annotation | ||
IL_4V6O_024 | No text annotation | ||
IL_4V6O_224 | No text annotation | ||
IL_4V6O_025 | Single stack bend | ||
IL_4V6O_026 | SSU/LSU pseudoknot | ||
IL_4V6O_027 | Kink-turn related | ||
IL_4V6O_028 | No text annotation | ||
IL_4V6O_029 | tSH-tHW-tHS | ||
IL_4V6O_030 | Major groove platform | ||
IL_4V6O_031 | Major groove minor groove platform; mini C-loop | ||
IL_4V6O_225 | No text annotation | ||
IL_4V6O_185 | No text annotation | ||
IL_4V6O_032 | No text annotation | ||
IL_4V6O_033 | Major groove platform; stack outside cWW | ||
IL_4V6O_034 | No text annotation | ||
IL_4V6O_186 | Single stack bend | ||
IL_4V6O_035 | Tandem non-canonical cWW pairs | ||
IL_4V6O_036 | No text annotation | ||
IL_4V6O_037 | Kink-turn | ||
IL_4V6O_187 | No text annotation | ||
IL_4V6O_038 | No text annotation | ||
IL_4V6O_039 | No text annotation | ||
IL_4V6O_226 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | ||
IL_4V6O_040 | 9x7 Sarcin-Ricin with inserted C; G-bulge | ||
IL_4V6O_041 | Single bulged A | ||
IL_4V6O_042 | Single bulged G | ||
IL_4V6O_043 | Minor groove platform | ||
IL_4V6O_044 | Minor groove platform | ||
IL_4V6O_045 | Minor groove platform | ||
IL_4V6O_046 | Single stack bend | ||
IL_4V6O_188 | Isolated non-canonical cWW pair | ||
IL_4V6O_047 | Tandem non-canonical cWW pairs | ||
IL_4V6O_048 | Isolated cWS basepair | ||
IL_4V6O_049 | Minor groove platform | ||
IL_4V6O_189 | No text annotation | ||
IL_4V6O_050 | Single bulged A | ||
IL_4V6O_051 | Isolated non-canonical cWW pair | ||
IL_4V6O_052 | No text annotation | ||
IL_4V6O_053 | Minor groove platform | ||
IL_4V6O_227 | No text annotation | ||
IL_4V6O_054 | No text annotation | ||
IL_4V6O_228 | No text annotation | ||
IL_4V6O_055 | No text annotation | ||
IL_4V6O_190 | No text annotation | ||
IL_4V6O_056 | No text annotation | ||
IL_4V6O_057 | Double sheared with non-canonical cWW | ||
IL_4V6O_058 | No text annotation | ||
IL_4V6O_059 | No text annotation | ||
IL_4V6O_060 | No text annotation | ||
IL_4V6O_191 | Isolated non-canonical cWW pair | ||
IL_4V6O_061 | No text annotation | ||
IL_4V6O_192 | Stack and bulge | ||
IL_4V6O_193 | Isolated non-canonical cWW pair | ||
IL_4V6O_062 | Tandem non-canonical cWW pairs | ||
IL_4V6O_063 | No text annotation | ||
IL_4V6O_064 | Triple sheared related | ||
IL_4V6O_065 | No text annotation | ||
IL_4V6O_066 | No text annotation | ||
IL_4V6O_067 | Major groove intercalation | ||
IL_4V6O_068 | No text annotation | ||
IL_4V6O_069 | No text annotation | ||
IL_4V6O_070 | Symmetric double minor groove platform | ||
IL_4V6O_071 | Bacterial 5S Loop E | ||
IL_4V6O_194 | No text annotation | ||
IL_4V6O_072 | No text annotation | ||
IL_4V6O_073 | Single bulged A | ||
IL_4V6O_074 | Minor groove platform | ||
IL_4V6O_075 | No text annotation | ||
IL_4V6O_076 | No text annotation | ||
IL_4V6O_195 | No text annotation | ||
IL_4V6O_077 | 8x7 Sarcin-Ricin; G-bulge | ||
IL_4V6O_078 | 7x6 Sarcin-Ricin; G-bulge | ||
IL_4V6O_079 | No text annotation | ||
IL_4V6O_080 | No text annotation | ||
IL_4V6O_196 | No text annotation | ||
IL_4V6O_081 | No text annotation | ||
IL_4V6O_229 | No text annotation | ||
IL_4V6O_082 | No text annotation | ||
IL_4V6O_083 | Double sheared | ||
IL_4V6O_084 | Isolated non-canonical cWW pair | ||
IL_4V6O_085 | AAA cross-strand stack | ||
IL_4V6O_086 | No text annotation | ||
IL_4V6O_087 | tHW-tHW cross-strand stack | ||
IL_4V6O_088 | Single bulged A | ||
IL_4V6O_089 | Quadruple sheared | ||
IL_4V6O_090 | Major groove platform | ||
IL_4V6O_091 | Multiple bulged bases | ||
IL_4V6O_092 | Single base bend | ||
IL_4V6O_093 | No text annotation | ||
IL_4V6O_094 | No text annotation | ||
IL_4V6O_230 | Single stack bend | ||
IL_4V6O_095 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | ||
IL_4V6O_096 | Minor groove platform | ||
IL_4V6O_097 | C-loop | ||
IL_4V6O_098 | Isolated non-canonical cWW pair | ||
IL_4V6O_197 | No text annotation | ||
IL_4V6O_099 | No text annotation | ||
IL_4V6O_100 | Major groove intercalation | ||
IL_4V6O_101 | No text annotation | ||
IL_4V6O_102 | Minor groove platform | ||
IL_4V6O_103 | Single bulged C | ||
IL_4V6O_104 | UAA/GAN | ||
IL_4V6O_105 | SSU/LSU pseudoknot | ||
IL_4V6O_106 | Single bulged U | ||
IL_4V6O_107 | Kink-turn related | ||
IL_4V6O_198 | No text annotation | ||
IL_4V6O_108 | No text annotation | ||
IL_4V6O_109 | Isolated non-canonical cWW pair | ||
IL_4V6O_199 | Tandem non-canonical cWW pairs | ||
IL_4V6O_110 | No text annotation | ||
IL_4V6O_200 | No text annotation | ||
IL_4V6O_111 | No text annotation | ||
IL_4V6O_112 | No text annotation | ||
IL_4V6O_113 | No text annotation | ||
IL_4V6O_231 | Isolated cWS basepair | ||
IL_4V6O_114 | No text annotation | ||
IL_4V6O_201 | No text annotation | ||
IL_4V6O_115 | No text annotation | ||
IL_4V6O_116 | Kink-turn | ||
IL_4V6O_202 | No text annotation | ||
IL_4V6O_117 | 8x7 Sarcin-Ricin; G-bulge | ||
IL_4V6O_118 | Major groove platform; stack outside cWW | ||
IL_4V6O_232 | C-loop | ||
IL_4V6O_119 | No text annotation | ||
IL_4V6O_120 | No text annotation | ||
IL_4V6O_233 | Intercalated cWW | ||
IL_4V6O_203 | UAA/GAN | ||
IL_4V6O_234 | No text annotation | ||
IL_4V6O_121 | tSH-tHW-tHS | ||
IL_4V6O_122 | No text annotation | ||
IL_4V6O_204 | No text annotation | ||
IL_4V6O_123 | UAA/GAN | ||
IL_4V6O_124 | Tandem non-canonical cWW pairs | ||
IL_4V6O_125 | No text annotation | ||
IL_4V6O_205 | tSH-tHW | ||
IL_4V6O_126 | No text annotation | ||
IL_4V6O_127 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | ||
IL_4V6O_206 | tSH-tHW-tHS | ||
IL_4V6O_128 | No text annotation | ||
IL_4V6O_207 | No text annotation | ||
IL_4V6O_129 | Single bulged A | ||
IL_4V6O_130 | UAA/GAN variation | ||
IL_4V6O_208 | Triple sheared related | ||
IL_4V6O_131 | No text annotation | ||
IL_4V6O_132 | Isolated tWW turn | ||
IL_4V6O_133 | Major groove platform; stack outside cWW | ||
IL_4V6O_209 | No text annotation | ||
IL_4V6O_134 | Intercalated tWH | ||
IL_4V6O_135 | tSH-tSH-tHH-tHS | ||
IL_4V6O_136 | 6x5 Sarcin-Ricin; G-bulge | ||
IL_4V6O_235 | Triple sheared with non-canonical cWW | ||
IL_4V6O_137 | No text annotation | ||
IL_4V6O_138 | Single bulged C | ||
IL_4V6O_139 | Single bulged A | ||
IL_4V6O_140 | Kink-turn related | ||
IL_4V6O_141 | No text annotation | ||
IL_4V6O_142 | Isolated non-canonical cWW pair | ||
IL_4V6O_236 | Major groove intercalation | ||
IL_4V6O_210 | No text annotation | ||
IL_4V6O_143 | UAA/GAN related | ||
IL_4V6O_144 | Major groove intercalation | ||
IL_4V6O_145 | No text annotation | ||
IL_4V6O_146 | Major groove platform | ||
IL_4V6O_147 | No text annotation | ||
IL_4V6O_211 | Single bulged U | ||
IL_4V6O_148 | No text annotation | ||
IL_4V6O_212 | No text annotation | ||
IL_4V6O_149 | Isolated tHS basepair with bulges | ||
IL_4V6O_213 | Tandem non-canonical cWW pairs | ||
IL_4V6O_150 | Triple non-canonical cWW pairs | ||
IL_4V6O_151 | Not an internal loop | ||
IL_4V6O_152 | No text annotation | ||
IL_4V6O_153 | No text annotation | ||
IL_4V6O_237 | Single stack bend | ||
IL_4V6O_154 | No text annotation | ||
IL_4V6O_155 | No text annotation | ||
IL_4V6O_156 | No text annotation | ||
IL_4V6O_157 | Single bulged U | ||
IL_4V6O_214 | Isolated non-canonical cWW pair | ||
IL_4V6O_158 | Double sheared | ||
IL_4V6O_159 | Single bulged U | ||
IL_4V6O_215 | Major groove platform | ||
IL_4V6O_160 | No text annotation | ||
IL_4V6O_216 | Major groove platform | ||
IL_4V6O_161 | No text annotation | ||
IL_4V6O_162 | Double sheared with non-canonical cWW | ||
IL_4V6O_163 | No text annotation | ||
IL_4V6O_164 | Isolated non-canonical cWW pair | ||
IL_4V6O_165 | Multiple bulged bases | ||
IL_4V6O_166 | No text annotation | ||
IL_4V6O_217 | Isolated non-canonical cWW pair | ||
IL_4V6O_167 | No text annotation | ||
IL_4V6O_168 | Single bulged A | ||
IL_4V6O_169 | tSH-tHS-tHW | ||
IL_4V6O_170 | Sarcin-Ricin target in LSU H95; G-bulge | ||
IL_4V6O_238 | Isolated non-canonical cWW pair | ||
IL_4V6O_218 | Tandem non-canonical cWW pairs | ||
IL_4V6O_171 | C-loop | ||
IL_4V6O_172 | UAA/GAN related, with intercalation | ||
IL_4V6O_173 | Multiple bulged bases | ||
IL_4V6O_174 | UAA/GAN with extra cWW | ||
IL_4V6O_175 | No text annotation | ||
IL_4V6O_176 | No text annotation | ||
IL_4V6O_177 | Major groove intercalation | ||
IL_4V6O_178 | No text annotation | ||
IL_4V6O_179 | No text annotation |
Valid loops
No loops found
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
J3_4V6O_027 | No text annotation | ||
J3_4V6O_001 | No text annotation | ||
J3_4V6O_028 | No text annotation | ||
J3_4V6O_040 | No text annotation | ||
J3_4V6O_041 | No text annotation | ||
J3_4V6O_002 | No text annotation | ||
J3_4V6O_029 | No text annotation | ||
J3_4V6O_003 | No text annotation | ||
J3_4V6O_004 | No text annotation | ||
J3_4V6O_030 | No text annotation | ||
J3_4V6O_005 | No text annotation | ||
J3_4V6O_006 | No text annotation | ||
J3_4V6O_031 | No text annotation | ||
J3_4V6O_007 | No text annotation | ||
J3_4V6O_032 | No text annotation | ||
J3_4V6O_008 | No text annotation | ||
J3_4V6O_042 | No text annotation | ||
J3_4V6O_009 | No text annotation | ||
J3_4V6O_045 | No text annotation | ||
J3_4V6O_010 | No text annotation | ||
J3_4V6O_011 | No text annotation | ||
J3_4V6O_043 | No text annotation | ||
J3_4V6O_033 | No text annotation | ||
J3_4V6O_012 | No text annotation | ||
J3_4V6O_013 | No text annotation | ||
J3_4V6O_014 | No text annotation | ||
J3_4V6O_034 | No text annotation | ||
J3_4V6O_035 | No text annotation | ||
J3_4V6O_015 | No text annotation | ||
J3_4V6O_036 | No text annotation | ||
J3_4V6O_016 | No text annotation | ||
J3_4V6O_037 | No text annotation | ||
J3_4V6O_017 | No text annotation | ||
J3_4V6O_018 | No text annotation | ||
J3_4V6O_038 | No text annotation | ||
J3_4V6O_044 | No text annotation | ||
J3_4V6O_019 | No text annotation | ||
J3_4V6O_020 | No text annotation | ||
J3_4V6O_021 | No text annotation | ||
J3_4V6O_039 | No text annotation | ||
J3_4V6O_022 | Kink-turn 3-way junction | ||
J3_4V6O_023 | No text annotation | ||
J3_4V6O_024 | No text annotation | ||
J3_4V6O_025 | No text annotation | ||
J3_4V6O_026 | No text annotation | ||
J4_4V6O_017 | No text annotation | ||
J4_4V6O_001 | No text annotation | ||
J4_4V6O_002 | No text annotation | ||
J4_4V6O_003 | No text annotation | ||
J4_4V6O_018 | tRNA junction | ||
J4_4V6O_004 | No text annotation | ||
J4_4V6O_005 | tRNA junction | ||
J4_4V6O_006 | No text annotation | ||
J4_4V6O_007 | No text annotation | ||
J4_4V6O_008 | No text annotation | ||
J4_4V6O_009 | No text annotation | ||
J4_4V6O_010 | No text annotation | ||
J4_4V6O_011 | No text annotation | ||
J4_4V6O_012 | No text annotation | ||
J4_4V6O_019 | No text annotation | ||
J4_4V6O_013 | No text annotation | ||
J4_4V6O_014 | No text annotation | ||
J4_4V6O_020 | No text annotation | ||
J4_4V6O_015 | No text annotation | ||
J4_4V6O_016 | No text annotation | ||
J5_4V6O_001 | No text annotation | ||
J5_4V6O_002 | No text annotation | ||
J5_4V6O_003 | No text annotation | ||
J5_4V6O_004 | No text annotation | ||
J5_4V6O_005 | No text annotation | ||
J5_4V6O_010 | No text annotation | ||
J5_4V6O_006 | No text annotation | ||
J5_4V6O_007 | No text annotation | ||
J5_4V6O_008 | No text annotation | ||
J5_4V6O_009 | No text annotation | ||
J6_4V6O_001 | No text annotation | ||
J7_4V6O_004 | No text annotation | ||
J7_4V6O_001 | No text annotation | ||
J7_4V6O_002 | No text annotation | ||
J7_4V6O_005 | No text annotation | ||
J7_4V6O_003 | No text annotation |
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