Valid loops

No loops found

Problematic loops

#loop idProblemSequence
HL_4V6O_001No text annotation
HL_4V6O_002No text annotation
HL_4V6O_116No text annotation
HL_4V6O_003GNRA
HL_4V6O_004GNRA
HL_4V6O_005UNCG
HL_4V6O_006GNRA related
HL_4V6O_007GNRA
HL_4V6O_008No text annotation
HL_4V6O_009UNCG
HL_4V6O_010GNRA
HL_4V6O_011UNCG
HL_4V6O_012No text annotation
HL_4V6O_013No text annotation
HL_4V6O_109GNRA variation
HL_4V6O_014No text annotation
HL_4V6O_015No text annotation
HL_4V6O_016GNRA
HL_4V6O_017No text annotation
HL_4V6O_018No text annotation
HL_4V6O_019GNRA
HL_4V6O_020GNRA
HL_4V6O_021No text annotation
HL_4V6O_022GNRA
HL_4V6O_023UNCG
HL_4V6O_024GNRA
HL_4V6O_025T-loop related
HL_4V6O_026No text annotation
HL_4V6O_027GNRA
HL_4V6O_028UNCG variation
HL_4V6O_029T-loop with 3 stacked bulged bases
HL_4V6O_030No text annotation
HL_4V6O_110No text annotation
HL_4V6O_031UNCG
HL_4V6O_032GNRA
HL_4V6O_033No text annotation
HL_4V6O_034tRNA anticodon loop
HL_4V6O_035No text annotation
HL_4V6O_117T-loop with 2 stacked bulged bases
HL_4V6O_036No text annotation
HL_4V6O_037tRNA anticodon loop
HL_4V6O_038T-loop with 2 stacked bulged bases
HL_4V6O_111No text annotation
HL_4V6O_039No text annotation
HL_4V6O_040Mini UNCG
HL_4V6O_041No text annotation
HL_4V6O_112No text annotation
HL_4V6O_042No text annotation
HL_4V6O_043No text annotation
HL_4V6O_044No text annotation
HL_4V6O_045No text annotation
HL_4V6O_113No text annotation
HL_4V6O_046No text annotation
HL_4V6O_047No text annotation
HL_4V6O_048No text annotation
HL_4V6O_049T-loop with 2 stacked bulged bases
HL_4V6O_050No text annotation
HL_4V6O_051T-loop with unstacked turn
HL_4V6O_052No text annotation
HL_4V6O_118No text annotation
HL_4V6O_053No text annotation
HL_4V6O_054GNRA
HL_4V6O_055GNRA
HL_4V6O_056No text annotation
HL_4V6O_057No text annotation
HL_4V6O_058No text annotation
HL_4V6O_059GNRA
HL_4V6O_060No text annotation
HL_4V6O_061GNRA wlth tandem sheared
HL_4V6O_062No text annotation
HL_4V6O_063UNCG variation
HL_4V6O_064No text annotation
HL_4V6O_065Externally structured
HL_4V6O_066No text annotation
HL_4V6O_067No text annotation
HL_4V6O_068No text annotation
HL_4V6O_069No text annotation
HL_4V6O_070Externally structured
HL_4V6O_071GNRA
HL_4V6O_072T-loop with 2 stacked bulged bases
HL_4V6O_073Mini UNCG
HL_4V6O_074GNRA
HL_4V6O_075No text annotation
HL_4V6O_076No text annotation
HL_4V6O_077No text annotation
HL_4V6O_078UNCG
HL_4V6O_079No text annotation
HL_4V6O_080No text annotation
HL_4V6O_081GNRA
HL_4V6O_082UNCG
HL_4V6O_083Mini UNCG related
HL_4V6O_084No text annotation
HL_4V6O_085No text annotation
HL_4V6O_086No text annotation
HL_4V6O_087GNRA
HL_4V6O_088No text annotation
HL_4V6O_089No text annotation
HL_4V6O_114No text annotation
HL_4V6O_090No text annotation
HL_4V6O_091No text annotation
HL_4V6O_092No text annotation
HL_4V6O_119No text annotation
HL_4V6O_093No text annotation
HL_4V6O_094No text annotation
HL_4V6O_120No text annotation
HL_4V6O_095Pseudoknot geometry
HL_4V6O_096GNRA
HL_4V6O_097GNRA
HL_4V6O_098No text annotation
HL_4V6O_099UNCG variation
HL_4V6O_115tRNA anticodon loop
HL_4V6O_100No text annotation
HL_4V6O_101No text annotation
HL_4V6O_102GNRA
HL_4V6O_103GNRA
HL_4V6O_104No text annotation
HL_4V6O_121Ribsomal LSU H95
HL_4V6O_105No text annotation
HL_4V6O_106No text annotation
HL_4V6O_107No text annotation
HL_4V6O_108GNRA

Valid loops

No loops found

Problematic loops

#loop idProblemSequence
IL_4V6O_001Isolated non-canonical cWW pair
IL_4V6O_002Isolated non-canonical cWW pair
IL_4V6O_219Single bulged A
IL_4V6O_003No text annotation
IL_4V6O_004Minor groove platform
IL_4V6O_005Multiple bulged bases
IL_4V6O_006Minor groove platform with extra cWW
IL_4V6O_007Minor groove platform
IL_4V6O_220No text annotation
IL_4V6O_008No text annotation
IL_4V6O_009No text annotation
IL_4V6O_180Isolated non-canonical cWW pair
IL_4V6O_010No text annotation
IL_4V6O_011Tandem non-canonical cWW pairs
IL_4V6O_221Isolated non-canonical cWW pair
IL_4V6O_012Isolated cWH basepair
IL_4V6O_013No text annotation
IL_4V6O_181tWH-tWH-tHW-tHW
IL_4V6O_014Multiple bulged bases
IL_4V6O_015Kink-turn with non-sequential stacking
IL_4V6O_222No text annotation
IL_4V6O_016No text annotation
IL_4V6O_182No text annotation
IL_4V6O_017No text annotation
IL_4V6O_183Single bulged U
IL_4V6O_018C-loop
IL_4V6O_223Single bulged G
IL_4V6O_019Isolated non-canonical cWW with bulges
IL_4V6O_184No text annotation
IL_4V6O_020No text annotation
IL_4V6O_021Other IL
IL_4V6O_022tSH-tHW-tWW
IL_4V6O_023No text annotation
IL_4V6O_024No text annotation
IL_4V6O_224No text annotation
IL_4V6O_025Single stack bend
IL_4V6O_026SSU/LSU pseudoknot
IL_4V6O_027Kink-turn related
IL_4V6O_028No text annotation
IL_4V6O_029tSH-tHW-tHS
IL_4V6O_030Major groove platform
IL_4V6O_031Major groove minor groove platform; mini C-loop
IL_4V6O_225No text annotation
IL_4V6O_185No text annotation
IL_4V6O_032No text annotation
IL_4V6O_033Major groove platform; stack outside cWW
IL_4V6O_034No text annotation
IL_4V6O_186Single stack bend
IL_4V6O_035Tandem non-canonical cWW pairs
IL_4V6O_036No text annotation
IL_4V6O_037Kink-turn
IL_4V6O_187No text annotation
IL_4V6O_038No text annotation
IL_4V6O_039No text annotation
IL_4V6O_2268x6 Sarcin-Ricin with inserted Y; G-bulge
IL_4V6O_0409x7 Sarcin-Ricin with inserted C; G-bulge
IL_4V6O_041Single bulged A
IL_4V6O_042Single bulged G
IL_4V6O_043Minor groove platform
IL_4V6O_044Minor groove platform
IL_4V6O_045Minor groove platform
IL_4V6O_046Single stack bend
IL_4V6O_188Isolated non-canonical cWW pair
IL_4V6O_047Tandem non-canonical cWW pairs
IL_4V6O_048Isolated cWS basepair
IL_4V6O_049Minor groove platform
IL_4V6O_189No text annotation
IL_4V6O_050Single bulged A
IL_4V6O_051Isolated non-canonical cWW pair
IL_4V6O_052No text annotation
IL_4V6O_053Minor groove platform
IL_4V6O_227No text annotation
IL_4V6O_054No text annotation
IL_4V6O_228No text annotation
IL_4V6O_055No text annotation
IL_4V6O_190No text annotation
IL_4V6O_056No text annotation
IL_4V6O_057Double sheared with non-canonical cWW
IL_4V6O_058No text annotation
IL_4V6O_059No text annotation
IL_4V6O_060No text annotation
IL_4V6O_191Isolated non-canonical cWW pair
IL_4V6O_061No text annotation
IL_4V6O_192Stack and bulge
IL_4V6O_193Isolated non-canonical cWW pair
IL_4V6O_062Tandem non-canonical cWW pairs
IL_4V6O_063No text annotation
IL_4V6O_064Triple sheared related
IL_4V6O_065No text annotation
IL_4V6O_066No text annotation
IL_4V6O_067Major groove intercalation
IL_4V6O_068No text annotation
IL_4V6O_069No text annotation
IL_4V6O_070Symmetric double minor groove platform
IL_4V6O_071Bacterial 5S Loop E
IL_4V6O_194No text annotation
IL_4V6O_072No text annotation
IL_4V6O_073Single bulged A
IL_4V6O_074Minor groove platform
IL_4V6O_075No text annotation
IL_4V6O_076No text annotation
IL_4V6O_195No text annotation
IL_4V6O_0778x7 Sarcin-Ricin; G-bulge
IL_4V6O_0787x6 Sarcin-Ricin; G-bulge
IL_4V6O_079No text annotation
IL_4V6O_080No text annotation
IL_4V6O_196No text annotation
IL_4V6O_081No text annotation
IL_4V6O_229No text annotation
IL_4V6O_082No text annotation
IL_4V6O_083Double sheared
IL_4V6O_084Isolated non-canonical cWW pair
IL_4V6O_085AAA cross-strand stack
IL_4V6O_086No text annotation
IL_4V6O_087tHW-tHW cross-strand stack
IL_4V6O_088Single bulged A
IL_4V6O_089Quadruple sheared
IL_4V6O_090Major groove platform
IL_4V6O_091Multiple bulged bases
IL_4V6O_092Single base bend
IL_4V6O_093No text annotation
IL_4V6O_094No text annotation
IL_4V6O_230Single stack bend
IL_4V6O_0957x7 Sarcin-Ricin with intercalated A; G-bulge
IL_4V6O_096Minor groove platform
IL_4V6O_097C-loop
IL_4V6O_098Isolated non-canonical cWW pair
IL_4V6O_197No text annotation
IL_4V6O_099No text annotation
IL_4V6O_100Major groove intercalation
IL_4V6O_101No text annotation
IL_4V6O_102Minor groove platform
IL_4V6O_103Single bulged C
IL_4V6O_104UAA/GAN
IL_4V6O_105SSU/LSU pseudoknot
IL_4V6O_106Single bulged U
IL_4V6O_107Kink-turn related
IL_4V6O_198No text annotation
IL_4V6O_108No text annotation
IL_4V6O_109Isolated non-canonical cWW pair
IL_4V6O_199Tandem non-canonical cWW pairs
IL_4V6O_110No text annotation
IL_4V6O_200No text annotation
IL_4V6O_111No text annotation
IL_4V6O_112No text annotation
IL_4V6O_113No text annotation
IL_4V6O_231Isolated cWS basepair
IL_4V6O_114No text annotation
IL_4V6O_201No text annotation
IL_4V6O_115No text annotation
IL_4V6O_116Kink-turn
IL_4V6O_202No text annotation
IL_4V6O_1178x7 Sarcin-Ricin; G-bulge
IL_4V6O_118Major groove platform; stack outside cWW
IL_4V6O_232C-loop
IL_4V6O_119No text annotation
IL_4V6O_120No text annotation
IL_4V6O_233Intercalated cWW
IL_4V6O_203UAA/GAN
IL_4V6O_234No text annotation
IL_4V6O_121tSH-tHW-tHS
IL_4V6O_122No text annotation
IL_4V6O_204No text annotation
IL_4V6O_123UAA/GAN
IL_4V6O_124Tandem non-canonical cWW pairs
IL_4V6O_125No text annotation
IL_4V6O_205tSH-tHW
IL_4V6O_126No text annotation
IL_4V6O_1275x5 Sarcin-Ricin with intercalated A; G-bulge
IL_4V6O_206tSH-tHW-tHS
IL_4V6O_128No text annotation
IL_4V6O_207No text annotation
IL_4V6O_129Single bulged A
IL_4V6O_130UAA/GAN variation
IL_4V6O_208Triple sheared related
IL_4V6O_131No text annotation
IL_4V6O_132Isolated tWW turn
IL_4V6O_133Major groove platform; stack outside cWW
IL_4V6O_209No text annotation
IL_4V6O_134Intercalated tWH
IL_4V6O_135tSH-tSH-tHH-tHS
IL_4V6O_1366x5 Sarcin-Ricin; G-bulge
IL_4V6O_235Triple sheared with non-canonical cWW
IL_4V6O_137No text annotation
IL_4V6O_138Single bulged C
IL_4V6O_139Single bulged A
IL_4V6O_140Kink-turn related
IL_4V6O_141No text annotation
IL_4V6O_142Isolated non-canonical cWW pair
IL_4V6O_236Major groove intercalation
IL_4V6O_210No text annotation
IL_4V6O_143UAA/GAN related
IL_4V6O_144Major groove intercalation
IL_4V6O_145No text annotation
IL_4V6O_146Major groove platform
IL_4V6O_147No text annotation
IL_4V6O_211Single bulged U
IL_4V6O_148No text annotation
IL_4V6O_212No text annotation
IL_4V6O_149Isolated tHS basepair with bulges
IL_4V6O_213Tandem non-canonical cWW pairs
IL_4V6O_150Triple non-canonical cWW pairs
IL_4V6O_151Not an internal loop
IL_4V6O_152No text annotation
IL_4V6O_153No text annotation
IL_4V6O_237Single stack bend
IL_4V6O_154No text annotation
IL_4V6O_155No text annotation
IL_4V6O_156No text annotation
IL_4V6O_157Single bulged U
IL_4V6O_214Isolated non-canonical cWW pair
IL_4V6O_158Double sheared
IL_4V6O_159Single bulged U
IL_4V6O_215Major groove platform
IL_4V6O_160No text annotation
IL_4V6O_216Major groove platform
IL_4V6O_161No text annotation
IL_4V6O_162Double sheared with non-canonical cWW
IL_4V6O_163No text annotation
IL_4V6O_164Isolated non-canonical cWW pair
IL_4V6O_165Multiple bulged bases
IL_4V6O_166No text annotation
IL_4V6O_217Isolated non-canonical cWW pair
IL_4V6O_167No text annotation
IL_4V6O_168Single bulged A
IL_4V6O_169tSH-tHS-tHW
IL_4V6O_170Sarcin-Ricin target in LSU H95; G-bulge
IL_4V6O_238Isolated non-canonical cWW pair
IL_4V6O_218Tandem non-canonical cWW pairs
IL_4V6O_171C-loop
IL_4V6O_172UAA/GAN related, with intercalation
IL_4V6O_173Multiple bulged bases
IL_4V6O_174UAA/GAN with extra cWW
IL_4V6O_175No text annotation
IL_4V6O_176No text annotation
IL_4V6O_177Major groove intercalation
IL_4V6O_178No text annotation
IL_4V6O_179No text annotation

Valid loops

No loops found

Problematic loops

#loop idProblemSequence
J3_4V6O_027No text annotation
J3_4V6O_001No text annotation
J3_4V6O_028No text annotation
J3_4V6O_040No text annotation
J3_4V6O_041No text annotation
J3_4V6O_002No text annotation
J3_4V6O_029No text annotation
J3_4V6O_003No text annotation
J3_4V6O_004No text annotation
J3_4V6O_030No text annotation
J3_4V6O_005No text annotation
J3_4V6O_006No text annotation
J3_4V6O_031No text annotation
J3_4V6O_007No text annotation
J3_4V6O_032No text annotation
J3_4V6O_008No text annotation
J3_4V6O_042No text annotation
J3_4V6O_009No text annotation
J3_4V6O_045No text annotation
J3_4V6O_010No text annotation
J3_4V6O_011No text annotation
J3_4V6O_043No text annotation
J3_4V6O_033No text annotation
J3_4V6O_012No text annotation
J3_4V6O_013No text annotation
J3_4V6O_014No text annotation
J3_4V6O_034No text annotation
J3_4V6O_035No text annotation
J3_4V6O_015No text annotation
J3_4V6O_036No text annotation
J3_4V6O_016No text annotation
J3_4V6O_037No text annotation
J3_4V6O_017No text annotation
J3_4V6O_018No text annotation
J3_4V6O_038No text annotation
J3_4V6O_044No text annotation
J3_4V6O_019No text annotation
J3_4V6O_020No text annotation
J3_4V6O_021No text annotation
J3_4V6O_039No text annotation
J3_4V6O_022Kink-turn 3-way junction
J3_4V6O_023No text annotation
J3_4V6O_024No text annotation
J3_4V6O_025No text annotation
J3_4V6O_026No text annotation
J4_4V6O_017No text annotation
J4_4V6O_001No text annotation
J4_4V6O_002No text annotation
J4_4V6O_003No text annotation
J4_4V6O_018tRNA junction
J4_4V6O_004No text annotation
J4_4V6O_005tRNA junction
J4_4V6O_006No text annotation
J4_4V6O_007No text annotation
J4_4V6O_008No text annotation
J4_4V6O_009No text annotation
J4_4V6O_010No text annotation
J4_4V6O_011No text annotation
J4_4V6O_012No text annotation
J4_4V6O_019No text annotation
J4_4V6O_013No text annotation
J4_4V6O_014No text annotation
J4_4V6O_020No text annotation
J4_4V6O_015No text annotation
J4_4V6O_016No text annotation
J5_4V6O_001No text annotation
J5_4V6O_002No text annotation
J5_4V6O_003No text annotation
J5_4V6O_004No text annotation
J5_4V6O_005No text annotation
J5_4V6O_010No text annotation
J5_4V6O_006No text annotation
J5_4V6O_007No text annotation
J5_4V6O_008No text annotation
J5_4V6O_009No text annotation
J6_4V6O_001No text annotation
J7_4V6O_004No text annotation
J7_4V6O_001No text annotation
J7_4V6O_002No text annotation
J7_4V6O_005No text annotation
J7_4V6O_003No text annotation

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