HL_4V6O_034

3D structure

PDB id

4V6O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4a of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

14.7 Å

Loop

Sequence

U(OMC)UCCA(MIA)AA

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMC, MIA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6O_034 not in the Motif Atlas

Homologous match to HL_4TUE_034

Geometric discrepancy: 0.3769

The information below is about HL_4TUE_034

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_06059.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

51

Unit IDs

4V6O|1|AB|U|31
4V6O|1|AB|OMC|32
4V6O|1|AB|U|33
4V6O|1|AB|C|34
4V6O|1|AB|C|35
4V6O|1|AB|A|36
4V6O|1|AB|MIA|37
4V6O|1|AB|A|38
4V6O|1|AB|A|39

Current chains

Chain AB

A site tRNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain AC

mRNA

Chain AO

30S ribosomal protein S12

Chain BB

Large subunit ribosomal RNA; LSU rRNA