HL_4V6O_039
3D structure
- PDB id
- 4V6O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structural characterization of mRNA-tRNA translocation intermediates (class 4a of the six classes)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 14.7 Å
Loop
- Sequence
- CAUGCCG
- Length
- 7 nucleotides
- Bulged bases
- 4V6O|1|BA|U|40, 4V6O|1|BA|G|41
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V6O_039 not in the Motif Atlas
- Homologous match to HL_4V9F_071
- Geometric discrepancy: 0.3963
- The information below is about HL_4V9F_071
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_47787.2
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 10
Unit IDs
4V6O|1|BA|C|38
4V6O|1|BA|A|39
4V6O|1|BA|U|40
4V6O|1|BA|G|41
4V6O|1|BA|C|42
4V6O|1|BA|C|43
4V6O|1|BA|G|44
Current chains
- Chain BA
- 5S ribomosomal RNA
Nearby chains
- Chain B2
- 50S ribosomal protein L31
- Chain BB
- Large subunit ribosomal RNA; LSU rRNA
- Chain BG
- 50S ribosomal protein L5
- Chain BQ
- 50S ribosomal protein L18
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