HL_4V6O_043

3D structure

PDB id

4V6O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4a of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

14.7 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

4V6O|1|BB|A|125, 4V6O|1|BB|A|126, 4V6O|1|BB|A|127

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6O_043 not in the Motif Atlas

Homologous match to HL_4WF9_003

Geometric discrepancy: 0.1644

The information below is about HL_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

4V6O|1|BB|G|123
4V6O|1|BB|G|124
4V6O|1|BB|A|125
4V6O|1|BB|A|126
4V6O|1|BB|A|127
4V6O|1|BB|C|128

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain B5

50S ribosomal protein L34

Chain BV

50S ribosomal protein L23