HL_4V6O_052

3D structure

PDB id

4V6O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4a of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

14.7 Å

Loop

Sequence

GACACGUGGUAUC

Length

13 nucleotides

Bulged bases

4V6O|1|BB|G|386

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6O|1|BB|G|381
4V6O|1|BB|A|382
4V6O|1|BB|C|383
4V6O|1|BB|A|384
4V6O|1|BB|C|385
4V6O|1|BB|G|386
4V6O|1|BB|U|387
4V6O|1|BB|G|388
4V6O|1|BB|G|389
4V6O|1|BB|U|390
4V6O|1|BB|A|391
4V6O|1|BB|U|392
4V6O|1|BB|C|393

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain B6

50S ribosomal protein L35

Chain BN

50S ribosomal protein L15

Chain BZ

50S ribosomal protein L28