HL_4V6O_053

3D structure

PDB id

4V6O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4a of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

14.7 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

4V6O|1|BB|G|411

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6O_053 not in the Motif Atlas

Homologous match to HL_7RQB_014

Geometric discrepancy: 0.1459

The information below is about HL_7RQB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_96598.1

Basepair signature

cWW

Number of instances in this motif group

15

Unit IDs

4V6O|1|BB|G|410
4V6O|1|BB|G|411
4V6O|1|BB|A|412
4V6O|1|BB|C|413
4V6O|1|BB|C|414
4V6O|1|BB|A|415
4V6O|1|BB|U|416
4V6O|1|BB|C|417

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains