HL_4V6O_055

3D structure

PDB id

4V6O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4a of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

14.7 Å

Loop

Sequence

CGGCGAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6O_055 not in the Motif Atlas

Homologous match to HL_4WF9_016

Geometric discrepancy: 0.3323

The information below is about HL_4WF9_016

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

4V6O|1|BB|C|487
4V6O|1|BB|G|488
4V6O|1|BB|G|489
4V6O|1|BB|C|490
4V6O|1|BB|G|491
4V6O|1|BB|A|492
4V6O|1|BB|G|493

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain BU

50S ribosomal protein L22