HL_4V6O_066

3D structure

PDB id

4V6O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4a of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

14.7 Å

Loop

Sequence

G(PSU)GCUAACGU

Length

10 nucleotides

Bulged bases

4V6O|1|BB|U|958, 4V6O|1|BB|C|961

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6O_066 not in the Motif Atlas

Homologous match to HL_5J7L_159

Geometric discrepancy: 0.232

The information below is about HL_5J7L_159

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6O|1|BB|G|954
4V6O|1|BB|PSU|955
4V6O|1|BB|G|956
4V6O|1|BB|C|957
4V6O|1|BB|U|958
4V6O|1|BB|A|959
4V6O|1|BB|A|960
4V6O|1|BB|C|961
4V6O|1|BB|G|962
4V6O|1|BB|U|963

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain BA

5S ribosomal RNA; 5S rRNA

Chain BO

50S ribosomal protein L16

Chain BY

50S ribosomal protein L27