HL_4V6O_083

3D structure

PDB id

4V6O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4a of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

14.7 Å

Loop

Sequence

CUCG

Length

4 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6O_083 not in the Motif Atlas

Geometric match to HL_6AJK_001

Geometric discrepancy: 0.3793

The information below is about HL_6AJK_001

Detailed Annotation

Mini UNCG related

Broad Annotation

Mini UNCG related

Motif group

HL_56334.1

Basepair signature

cWW-F

Number of instances in this motif group

16

Unit IDs

4V6O|1|BB|C|1728
4V6O|1|BB|U|1729
4V6O|1|BB|C|1730
4V6O|1|BB|G|1731

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains