HL_4V6O_087
3D structure
- PDB id
- 4V6O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structural characterization of mRNA-tRNA translocation intermediates (class 4a of the six classes)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 14.7 Å
Loop
- Sequence
- CGCAAG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V6O_087 not in the Motif Atlas
- Geometric match to HL_5TBW_048
- Geometric discrepancy: 0.2275
- The information below is about HL_5TBW_048
- Detailed Annotation
- GNRA
- Broad Annotation
- No text annotation
- Motif group
- HL_37824.2
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 360
Unit IDs
4V6O|1|BB|C|1868
4V6O|1|BB|G|1869
4V6O|1|BB|C|1870
4V6O|1|BB|A|1871
4V6O|1|BB|A|1872
4V6O|1|BB|G|1873
Current chains
- Chain BB
- 23S ribomosomal RNA
Nearby chains
- Chain BC
- 50S ribosomal protein L1
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