HL_4V6O_089

3D structure

PDB id

4V6O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4a of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

14.7 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

4V6O|1|BB|U|1955

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6O_089 not in the Motif Atlas

Homologous match to HL_7RQB_049

Geometric discrepancy: 0.5299

The information below is about HL_7RQB_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51824.1

Basepair signature

cWW-F-F-tSH-F-F

Number of instances in this motif group

8

Unit IDs

4V6O|1|BB|G|1949
4V6O|1|BB|G|1950
4V6O|1|BB|U|1951
4V6O|1|BB|A|1952
4V6O|1|BB|A|1953
4V6O|1|BB|G|1954
4V6O|1|BB|U|1955
4V6O|1|BB|U|1956
4V6O|1|BB|C|1957

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain BM

50S ribosomal protein L14