HL_4V6O_090

3D structure

PDB id

4V6O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4a of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

14.7 Å

Loop

Sequence

GUG(6MZ)AGAUGC

Length

10 nucleotides

Bulged bases

4V6O|1|BB|A|2031, 4V6O|1|BB|G|2032

QA status

Modified nucleotides: 6MZ

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6O_090 not in the Motif Atlas

Geometric match to HL_4V9F_052

Geometric discrepancy: 0.3275

The information below is about HL_4V9F_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61996.2

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

8

Unit IDs

4V6O|1|BB|G|2027
4V6O|1|BB|U|2028
4V6O|1|BB|G|2029
4V6O|1|BB|6MZ|2030
4V6O|1|BB|A|2031
4V6O|1|BB|G|2032
4V6O|1|BB|A|2033
4V6O|1|BB|U|2034
4V6O|1|BB|G|2035
4V6O|1|BB|C|2036

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain B3

50S ribosomal protein L32

Chain BE

50S ribosomal protein L3

Chain BL

50S ribosomal protein L13