HL_4V6O_097

3D structure

PDB id

4V6O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4a of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

14.7 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6O_097 not in the Motif Atlas

Homologous match to HL_4WF9_054

Geometric discrepancy: 0.253

The information below is about HL_4WF9_054

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

4V6O|1|BB|C|2374
4V6O|1|BB|G|2375
4V6O|1|BB|A|2376
4V6O|1|BB|A|2377
4V6O|1|BB|A|2378
4V6O|1|BB|G|2379

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain B4

50S ribosomal protein L33

Chain BQ

50S ribosomal protein L18

Chain BY

50S ribosomal protein L27