HL_4V6O_115

3D structure

PDB id

4V6O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4a of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

14.7 Å

Loop

Sequence

CUGAAGUAGG

Length

10 nucleotides

Bulged bases

4V6O|1|BB|G|2529

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6O_115 not in the Motif Atlas

Geometric match to HL_3W3S_002

Geometric discrepancy: 0.3124

The information below is about HL_3W3S_002

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_06059.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

51

Unit IDs

4V6O|1|BB|C|2527
4V6O|1|BB|U|2528
4V6O|1|BB|G|2529
4V6O|1|BB|A|2530
4V6O|1|BB|A|2531
4V6O|1|BB|G|2532
4V6O|1|BB|U|2533
4V6O|1|BB|A|2534
4V6O|1|BB|G|2535
4V6O|1|BB|G|2536

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain B7

50S ribosomal protein L36

Chain BH

50S ribosomal protein L6