HL_4V6P_008

3D structure

PDB id

4V6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4b of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

13.5 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6P_008 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.2284

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

4V6P|1|AA|A|320
4V6P|1|AA|A|321
4V6P|1|AA|C|322
4V6P|1|AA|U|323
4V6P|1|AA|G|324
4V6P|1|AA|A|325
4V6P|1|AA|G|326
4V6P|1|AA|A|327
4V6P|1|AA|C|328
4V6P|1|AA|A|329
4V6P|1|AA|C|330
4V6P|1|AA|G|331
4V6P|1|AA|G|332
4V6P|1|AA|U|333

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AS

30S ribosomal protein S16

Chain AW

30S ribosomal protein S20