4V6P Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_4V6P_001 | No text annotation | ||
| HL_4V6P_110 | No text annotation | ||
| HL_4V6P_002 | No text annotation | ||
| HL_4V6P_003 | GNRA | ||
| HL_4V6P_004 | GNRA | ||
| HL_4V6P_005 | UNCG | ||
| HL_4V6P_006 | GNRA related | ||
| HL_4V6P_007 | GNRA | ||
| HL_4V6P_008 | No text annotation | ||
| HL_4V6P_009 | UNCG | ||
| HL_4V6P_010 | GNRA | ||
| HL_4V6P_011 | UNCG | ||
| HL_4V6P_012 | No text annotation | ||
| HL_4V6P_013 | No text annotation | ||
| HL_4V6P_111 | GNRA variation | ||
| HL_4V6P_014 | No text annotation | ||
| HL_4V6P_015 | No text annotation | ||
| HL_4V6P_016 | GNRA | ||
| HL_4V6P_017 | No text annotation | ||
| HL_4V6P_018 | No text annotation | ||
| HL_4V6P_112 | No text annotation | ||
| HL_4V6P_019 | GNRA | ||
| HL_4V6P_020 | GNRA | ||
| HL_4V6P_021 | No text annotation | ||
| HL_4V6P_022 | GNRA | ||
| HL_4V6P_023 | No text annotation | ||
| HL_4V6P_024 | GNRA | ||
| HL_4V6P_025 | T-loop related | ||
| HL_4V6P_026 | No text annotation | ||
| HL_4V6P_027 | GNRA | ||
| HL_4V6P_028 | GNRA | ||
| HL_4V6P_029 | T-loop with 3 stacked bulged bases | ||
| HL_4V6P_030 | No text annotation | ||
| HL_4V6P_031 | No text annotation | ||
| HL_4V6P_032 | GNRA | ||
| HL_4V6P_033 | No text annotation | ||
| HL_4V6P_034 | tRNA anticodon loop | ||
| HL_4V6P_035 | T-loop with 2 stacked bulged bases | ||
| HL_4V6P_036 | tRNA D-loop | ||
| HL_4V6P_037 | No text annotation | ||
| HL_4V6P_038 | T-loop with 2 stacked bulged bases | ||
| HL_4V6P_039 | No text annotation | ||
| HL_4V6P_040 | No text annotation | ||
| HL_4V6P_041 | No text annotation | ||
| HL_4V6P_042 | No text annotation | ||
| HL_4V6P_113 | No text annotation | ||
| HL_4V6P_043 | No text annotation | ||
| HL_4V6P_044 | UNCG | ||
| HL_4V6P_045 | No text annotation | ||
| HL_4V6P_114 | No text annotation | ||
| HL_4V6P_046 | No text annotation | ||
| HL_4V6P_047 | No text annotation | ||
| HL_4V6P_048 | No text annotation | ||
| HL_4V6P_049 | T-loop with 1 bulged base | ||
| HL_4V6P_050 | No text annotation | ||
| HL_4V6P_051 | T-loop with unstacked turn | ||
| HL_4V6P_052 | No text annotation | ||
| HL_4V6P_117 | No text annotation | ||
| HL_4V6P_053 | No text annotation | ||
| HL_4V6P_054 | GNRA | ||
| HL_4V6P_055 | GNRA | ||
| HL_4V6P_056 | No text annotation | ||
| HL_4V6P_057 | No text annotation | ||
| HL_4V6P_058 | No text annotation | ||
| HL_4V6P_059 | GNRA | ||
| HL_4V6P_060 | tRNA anticodon loop | ||
| HL_4V6P_118 | GNRA | ||
| HL_4V6P_115 | No text annotation | ||
| HL_4V6P_061 | GNRA wlth tandem sheared | ||
| HL_4V6P_062 | No text annotation | ||
| HL_4V6P_063 | UNCG variation | ||
| HL_4V6P_064 | No text annotation | ||
| HL_4V6P_065 | No text annotation | ||
| HL_4V6P_066 | No text annotation | ||
| HL_4V6P_067 | No text annotation | ||
| HL_4V6P_068 | No text annotation | ||
| HL_4V6P_069 | GNRA related | ||
| HL_4V6P_070 | Externally structured | ||
| HL_4V6P_071 | GNRA | ||
| HL_4V6P_072 | T-loop with 2 stacked bulged bases | ||
| HL_4V6P_073 | Pseudoknot geometry with 3' bulge | ||
| HL_4V6P_074 | GNRA | ||
| HL_4V6P_075 | No text annotation | ||
| HL_4V6P_076 | No text annotation | ||
| HL_4V6P_077 | No text annotation | ||
| HL_4V6P_078 | No text annotation | ||
| HL_4V6P_119 | UNCG | ||
| HL_4V6P_079 | Externally structured | ||
| HL_4V6P_080 | No text annotation | ||
| HL_4V6P_081 | GNRA | ||
| HL_4V6P_082 | UNCG | ||
| HL_4V6P_083 | No text annotation | ||
| HL_4V6P_084 | No text annotation | ||
| HL_4V6P_085 | No text annotation | ||
| HL_4V6P_086 | No text annotation | ||
| HL_4V6P_087 | GNRA | ||
| HL_4V6P_088 | No text annotation | ||
| HL_4V6P_089 | No text annotation | ||
| HL_4V6P_090 | No text annotation | ||
| HL_4V6P_091 | No text annotation | ||
| HL_4V6P_120 | No text annotation | ||
| HL_4V6P_092 | No text annotation | ||
| HL_4V6P_093 | No text annotation | ||
| HL_4V6P_094 | No text annotation | ||
| HL_4V6P_095 | No text annotation | ||
| HL_4V6P_096 | Pseudoknot geometry | ||
| HL_4V6P_097 | GNRA | ||
| HL_4V6P_098 | GNRA | ||
| HL_4V6P_099 | No text annotation | ||
| HL_4V6P_100 | No text annotation | ||
| HL_4V6P_101 | No text annotation | ||
| HL_4V6P_102 | No text annotation | ||
| HL_4V6P_103 | GNRA | ||
| HL_4V6P_104 | GNRA | ||
| HL_4V6P_116 | No text annotation | ||
| HL_4V6P_105 | Ribsomal LSU H95 | ||
| HL_4V6P_106 | No text annotation | ||
| HL_4V6P_107 | Mini UNCG | ||
| HL_4V6P_108 | No text annotation | ||
| HL_4V6P_121 | No text annotation | ||
| HL_4V6P_109 | No text annotation |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_4V6P_001 | Isolated non-canonical cWW pair | ||
| IL_4V6P_002 | Single bulged A | ||
| IL_4V6P_003 | No text annotation | ||
| IL_4V6P_004 | Minor groove platform | ||
| IL_4V6P_005 | Multiple bulged bases | ||
| IL_4V6P_006 | Minor groove platform with extra cWW | ||
| IL_4V6P_007 | Minor groove platform | ||
| IL_4V6P_008 | Single bulged G, near cWW | ||
| IL_4V6P_009 | Tandem non-canonical cWW pairs | ||
| IL_4V6P_172 | Isolated non-canonical cWW pair | ||
| IL_4V6P_010 | No text annotation | ||
| IL_4V6P_173 | Isolated near basepair | ||
| IL_4V6P_011 | Isolated cWH basepair | ||
| IL_4V6P_012 | No text annotation | ||
| IL_4V6P_174 | tWH-tWH-tHW-tHW | ||
| IL_4V6P_013 | No text annotation | ||
| IL_4V6P_175 | No text annotation | ||
| IL_4V6P_213 | No text annotation | ||
| IL_4V6P_014 | Kink-turn with non-sequential stacking | ||
| IL_4V6P_214 | No text annotation | ||
| IL_4V6P_015 | No text annotation | ||
| IL_4V6P_176 | No text annotation | ||
| IL_4V6P_016 | No text annotation | ||
| IL_4V6P_017 | Single bulged U | ||
| IL_4V6P_215 | C-loop | ||
| IL_4V6P_018 | C-loop with extra cWW pair | ||
| IL_4V6P_216 | Single bulged G | ||
| IL_4V6P_019 | No text annotation | ||
| IL_4V6P_177 | No text annotation | ||
| IL_4V6P_020 | Other IL | ||
| IL_4V6P_021 | tSH-tHW-tWW | ||
| IL_4V6P_022 | No text annotation | ||
| IL_4V6P_023 | Other IL | ||
| IL_4V6P_217 | No text annotation | ||
| IL_4V6P_024 | Single stack bend | ||
| IL_4V6P_025 | SSU/LSU pseudoknot | ||
| IL_4V6P_026 | Kink-turn related | ||
| IL_4V6P_027 | No text annotation | ||
| IL_4V6P_178 | tSH-tHW-tHS | ||
| IL_4V6P_028 | tSH-tHW-tHS-cWW | ||
| IL_4V6P_029 | Major groove platform | ||
| IL_4V6P_030 | Major groove minor groove platform; mini C-loop | ||
| IL_4V6P_031 | No text annotation | ||
| IL_4V6P_179 | No text annotation | ||
| IL_4V6P_032 | Major groove platform; stack outside cWW | ||
| IL_4V6P_033 | Single stack bend | ||
| IL_4V6P_034 | Tandem non-canonical cWW pairs | ||
| IL_4V6P_035 | No text annotation | ||
| IL_4V6P_036 | Kink-turn | ||
| IL_4V6P_180 | No text annotation | ||
| IL_4V6P_037 | Left turn | ||
| IL_4V6P_038 | tSH-tHW-tHS | ||
| IL_4V6P_181 | Isolated non-canonical cWW pair | ||
| IL_4V6P_039 | 10x8 Sarcin-Ricin; G-bulge | ||
| IL_4V6P_182 | Single bulged A | ||
| IL_4V6P_040 | Isolated non-canonical cWW with bulges | ||
| IL_4V6P_041 | Isolated non-canonical cWW pair | ||
| IL_4V6P_218 | Single bulged G | ||
| IL_4V6P_042 | Minor groove platform | ||
| IL_4V6P_043 | Minor groove platform | ||
| IL_4V6P_044 | Minor groove platform | ||
| IL_4V6P_045 | Single stack bend | ||
| IL_4V6P_183 | Isolated non-canonical cWW pair | ||
| IL_4V6P_046 | No text annotation | ||
| IL_4V6P_184 | No text annotation | ||
| IL_4V6P_185 | No text annotation | ||
| IL_4V6P_047 | No text annotation | ||
| IL_4V6P_219 | Minor groove platform | ||
| IL_4V6P_048 | Single bulged A | ||
| IL_4V6P_049 | No text annotation | ||
| IL_4V6P_050 | No text annotation | ||
| IL_4V6P_051 | Minor groove platform | ||
| IL_4V6P_220 | No text annotation | ||
| IL_4V6P_052 | No text annotation | ||
| IL_4V6P_053 | No text annotation | ||
| IL_4V6P_054 | No text annotation | ||
| IL_4V6P_055 | Double sheared with non-canonical cWW | ||
| IL_4V6P_056 | Quadruple sheared | ||
| IL_4V6P_057 | No text annotation | ||
| IL_4V6P_058 | No text annotation | ||
| IL_4V6P_186 | Isolated non-canonical cWW pair | ||
| IL_4V6P_059 | No text annotation | ||
| IL_4V6P_187 | No text annotation | ||
| IL_4V6P_221 | Isolated non-canonical cWW pair | ||
| IL_4V6P_060 | Tandem non-canonical cWW pairs | ||
| IL_4V6P_061 | No text annotation | ||
| IL_4V6P_188 | No text annotation | ||
| IL_4V6P_062 | Triple sheared related | ||
| IL_4V6P_063 | No text annotation | ||
| IL_4V6P_222 | No text annotation | ||
| IL_4V6P_064 | No text annotation | ||
| IL_4V6P_065 | Major groove intercalation | ||
| IL_4V6P_066 | No text annotation | ||
| IL_4V6P_067 | Minor groove platform | ||
| IL_4V6P_068 | Symmetric double minor groove platform | ||
| IL_4V6P_069 | Bacterial 5S Loop E | ||
| IL_4V6P_189 | No text annotation | ||
| IL_4V6P_070 | No text annotation | ||
| IL_4V6P_071 | Single bulged A | ||
| IL_4V6P_072 | Minor groove platform | ||
| IL_4V6P_073 | No text annotation | ||
| IL_4V6P_223 | No text annotation | ||
| IL_4V6P_074 | Single stack bend | ||
| IL_4V6P_075 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_4V6P_076 | 7x6 Sarcin-Ricin; G-bulge | ||
| IL_4V6P_077 | No text annotation | ||
| IL_4V6P_078 | No text annotation | ||
| IL_4V6P_079 | No text annotation | ||
| IL_4V6P_080 | No text annotation | ||
| IL_4V6P_081 | Double sheared | ||
| IL_4V6P_082 | AAA cross-strand stack | ||
| IL_4V6P_083 | Tandem non-canonical cWW pairs | ||
| IL_4V6P_190 | Isolated non-canonical cWW pair | ||
| IL_4V6P_084 | tHW-tHW cross-strand stack | ||
| IL_4V6P_085 | No text annotation | ||
| IL_4V6P_086 | Single bulged A | ||
| IL_4V6P_087 | Quadruple sheared | ||
| IL_4V6P_088 | Major groove platform | ||
| IL_4V6P_089 | Multiple bulged bases | ||
| IL_4V6P_191 | No text annotation | ||
| IL_4V6P_090 | Single stack bend | ||
| IL_4V6P_091 | No text annotation | ||
| IL_4V6P_092 | No text annotation | ||
| IL_4V6P_224 | Single stack bend | ||
| IL_4V6P_093 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | ||
| IL_4V6P_094 | No text annotation | ||
| IL_4V6P_192 | Tandem non-canonical cWW pairs | ||
| IL_4V6P_095 | Isolated non-canonical cWW pair | ||
| IL_4V6P_096 | Double sheared with non-canonical cWW | ||
| IL_4V6P_097 | No text annotation | ||
| IL_4V6P_098 | Tandem non-canonical cWW pairs | ||
| IL_4V6P_225 | Single bulged C | ||
| IL_4V6P_099 | UAA/GAN | ||
| IL_4V6P_100 | Tandem non-canonical cWW pairs | ||
| IL_4V6P_226 | SSU/LSU pseudoknot | ||
| IL_4V6P_101 | Single bulged U | ||
| IL_4V6P_102 | Kink-turn related | ||
| IL_4V6P_103 | No text annotation | ||
| IL_4V6P_104 | Isolated non-canonical cWW pair | ||
| IL_4V6P_193 | Tandem non-canonical cWW pairs | ||
| IL_4V6P_105 | No text annotation | ||
| IL_4V6P_194 | No text annotation | ||
| IL_4V6P_106 | Kink-turn | ||
| IL_4V6P_227 | No text annotation | ||
| IL_4V6P_107 | No text annotation | ||
| IL_4V6P_108 | Major groove platform | ||
| IL_4V6P_195 | No text annotation | ||
| IL_4V6P_228 | Isolated cWS basepair | ||
| IL_4V6P_109 | Tandem non-canonical cWW pairs | ||
| IL_4V6P_196 | No text annotation | ||
| IL_4V6P_110 | No text annotation | ||
| IL_4V6P_111 | Kink-turn | ||
| IL_4V6P_197 | No text annotation | ||
| IL_4V6P_112 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_4V6P_113 | Major groove platform; stack outside cWW | ||
| IL_4V6P_229 | No text annotation | ||
| IL_4V6P_114 | No text annotation | ||
| IL_4V6P_198 | UAA/GAN | ||
| IL_4V6P_115 | tSH-tHW-tHS | ||
| IL_4V6P_116 | No text annotation | ||
| IL_4V6P_117 | UAA/GAN | ||
| IL_4V6P_118 | Tandem non-canonical cWW pairs | ||
| IL_4V6P_199 | tSH-tHW | ||
| IL_4V6P_119 | No text annotation | ||
| IL_4V6P_120 | No text annotation | ||
| IL_4V6P_121 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | ||
| IL_4V6P_200 | tSH-tHW-tHS | ||
| IL_4V6P_122 | No text annotation | ||
| IL_4V6P_123 | Single bulged A | ||
| IL_4V6P_124 | UAA/GAN variation | ||
| IL_4V6P_125 | No text annotation | ||
| IL_4V6P_126 | Isolated tWW turn | ||
| IL_4V6P_127 | Major groove platform; stack outside cWW | ||
| IL_4V6P_201 | No text annotation | ||
| IL_4V6P_128 | Intercalated tWH | ||
| IL_4V6P_129 | tSH-tSH-tHH-tHS | ||
| IL_4V6P_130 | 6x5 Sarcin-Ricin; G-bulge | ||
| IL_4V6P_131 | Triple sheared with non-canonical cWW | ||
| IL_4V6P_132 | Single bulged C | ||
| IL_4V6P_133 | Single bulged A | ||
| IL_4V6P_134 | Kink-turn related | ||
| IL_4V6P_135 | No text annotation | ||
| IL_4V6P_202 | No text annotation | ||
| IL_4V6P_136 | Multiple bulged bases, near cWW | ||
| IL_4V6P_203 | No text annotation | ||
| IL_4V6P_137 | UAA/GAN variation | ||
| IL_4V6P_138 | Major groove intercalation | ||
| IL_4V6P_139 | No text annotation | ||
| IL_4V6P_140 | Major groove platform | ||
| IL_4V6P_141 | No text annotation | ||
| IL_4V6P_230 | No text annotation | ||
| IL_4V6P_142 | No text annotation | ||
| IL_4V6P_204 | Single bulged U | ||
| IL_4V6P_143 | No text annotation | ||
| IL_4V6P_205 | No text annotation | ||
| IL_4V6P_144 | Isolated tHS basepair with bulges | ||
| IL_4V6P_145 | Tandem non-canonical cWW pairs | ||
| IL_4V6P_206 | Isolated non-canonical cWW pair | ||
| IL_4V6P_146 | Isolated near basepair | ||
| IL_4V6P_147 | No text annotation | ||
| IL_4V6P_148 | No text annotation | ||
| IL_4V6P_149 | Other IL | ||
| IL_4V6P_150 | No text annotation | ||
| IL_4V6P_207 | No text annotation | ||
| IL_4V6P_151 | No text annotation | ||
| IL_4V6P_152 | Single bulged U | ||
| IL_4V6P_153 | Double sheared | ||
| IL_4V6P_154 | Major groove platform | ||
| IL_4V6P_208 | Major groove platform | ||
| IL_4V6P_155 | No text annotation | ||
| IL_4V6P_209 | No text annotation | ||
| IL_4V6P_156 | Double sheared with non-canonical cWW | ||
| IL_4V6P_157 | No text annotation | ||
| IL_4V6P_158 | Isolated non-canonical cWW with bulges | ||
| IL_4V6P_159 | No text annotation | ||
| IL_4V6P_210 | No text annotation | ||
| IL_4V6P_211 | Isolated near basepair | ||
| IL_4V6P_160 | No text annotation | ||
| IL_4V6P_161 | Single bulged A | ||
| IL_4V6P_162 | tSH-tHS-tHW | ||
| IL_4V6P_163 | Sarcin-Ricin target in LSU H95; G-bulge | ||
| IL_4V6P_231 | Isolated non-canonical cWW pair | ||
| IL_4V6P_212 | Tandem non-canonical cWW pairs | ||
| IL_4V6P_164 | C-loop | ||
| IL_4V6P_165 | UAA/GAN related, with intercalation | ||
| IL_4V6P_166 | Multiple bulged bases | ||
| IL_4V6P_167 | UAA/GAN with extra cWW | ||
| IL_4V6P_168 | No text annotation | ||
| IL_4V6P_169 | Single bulged C | ||
| IL_4V6P_170 | Multiple bulged bases with non-canonical cWW | ||
| IL_4V6P_171 | tHS double platform |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_4V6P_001 | No text annotation | ||
| J3_4V6P_025 | No text annotation | ||
| J3_4V6P_026 | No text annotation | ||
| J3_4V6P_002 | No text annotation | ||
| J3_4V6P_027 | No text annotation | ||
| J3_4V6P_003 | No text annotation | ||
| J3_4V6P_004 | No text annotation | ||
| J3_4V6P_028 | No text annotation | ||
| J3_4V6P_005 | No text annotation | ||
| J3_4V6P_006 | No text annotation | ||
| J3_4V6P_007 | No text annotation | ||
| J3_4V6P_029 | No text annotation | ||
| J3_4V6P_008 | No text annotation | ||
| J3_4V6P_039 | No text annotation | ||
| J3_4V6P_009 | No text annotation | ||
| J3_4V6P_010 | No text annotation | ||
| J3_4V6P_011 | No text annotation | ||
| J3_4V6P_040 | No text annotation | ||
| J3_4V6P_030 | No text annotation | ||
| J3_4V6P_012 | No text annotation | ||
| J3_4V6P_013 | No text annotation | ||
| J3_4V6P_014 | No text annotation | ||
| J3_4V6P_031 | No text annotation | ||
| J3_4V6P_032 | No text annotation | ||
| J3_4V6P_015 | No text annotation | ||
| J3_4V6P_033 | No text annotation | ||
| J3_4V6P_016 | No text annotation | ||
| J3_4V6P_017 | No text annotation | ||
| J3_4V6P_018 | No text annotation | ||
| J3_4V6P_034 | No text annotation | ||
| J3_4V6P_019 | No text annotation | ||
| J3_4V6P_020 | No text annotation | ||
| J3_4V6P_035 | No text annotation | ||
| J3_4V6P_036 | No text annotation | ||
| J3_4V6P_021 | Kink-turn 3-way junction | ||
| J3_4V6P_041 | No text annotation | ||
| J3_4V6P_022 | No text annotation | ||
| J3_4V6P_037 | No text annotation | ||
| J3_4V6P_042 | No text annotation | ||
| J3_4V6P_023 | No text annotation | ||
| J3_4V6P_024 | No text annotation | ||
| J3_4V6P_038 | No text annotation | ||
| J4_4V6P_016 | No text annotation | ||
| J4_4V6P_001 | No text annotation | ||
| J4_4V6P_002 | No text annotation | ||
| J4_4V6P_003 | No text annotation | ||
| J4_4V6P_017 | No text annotation | ||
| J4_4V6P_004 | No text annotation | ||
| J4_4V6P_005 | tRNA junction | ||
| J4_4V6P_006 | No text annotation | ||
| J4_4V6P_007 | No text annotation | ||
| J4_4V6P_008 | No text annotation | ||
| J4_4V6P_009 | No text annotation | ||
| J4_4V6P_010 | No text annotation | ||
| J4_4V6P_011 | No text annotation | ||
| J4_4V6P_012 | No text annotation | ||
| J4_4V6P_013 | No text annotation | ||
| J4_4V6P_014 | No text annotation | ||
| J4_4V6P_015 | No text annotation | ||
| J5_4V6P_001 | No text annotation | ||
| J5_4V6P_002 | No text annotation | ||
| J5_4V6P_003 | No text annotation | ||
| J5_4V6P_004 | No text annotation | ||
| J5_4V6P_005 | No text annotation | ||
| J5_4V6P_011 | No text annotation | ||
| J5_4V6P_006 | No text annotation | ||
| J5_4V6P_007 | No text annotation | ||
| J5_4V6P_008 | No text annotation | ||
| J5_4V6P_009 | No text annotation | ||
| J5_4V6P_012 | No text annotation | ||
| J5_4V6P_010 | No text annotation | ||
| J6_4V6P_001 | No text annotation | ||
| J7_4V6P_003 | No text annotation | ||
| J7_4V6P_001 | No text annotation | ||
| J7_4V6P_002 | No text annotation |
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