4V6P Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
HL_4V6P_001 | 1/AA/12:22 | No text annotation | homologous HL_5J7L_001 HL_89881.5 | |
HL_4V6P_110 | 1/AA/81:88 | No text annotation | homologous HL_6CZR_073 NA | |
HL_4V6P_002 | 1/AA/82:87 | No text annotation | ||
HL_4V6P_003 | 1/AA/158:163 | GNRA | homologous HL_5J7L_003 HL_37824.7 | |
HL_4V6P_004 | 1/AA/186:191 | GNRA | homologous HL_5J7L_004 HL_37824.7 | |
HL_4V6P_005 | 1/AA/207:212 | UNCG | homologous HL_5J7L_005 HL_34617.5 | |
HL_4V6P_006 | 1/AA/259:267 | GNRA related | homologous HL_4LFB_006 HL_84299.4 | |
HL_4V6P_007 | 1/AA/296:301 | GNRA | homologous HL_5J7L_007 HL_37824.7 | |
HL_4V6P_008 | 1/AA/320:333 | No text annotation | homologous HL_4LFB_008 HL_81205.3 | |
HL_4V6P_009 | 1/AA/342:347 | UNCG | homologous HL_4LFB_009 HL_34617.5 | |
HL_4V6P_010 | 1/AA/379:384 | GNRA | homologous HL_4LFB_010 HL_37824.7 | |
HL_4V6P_011 | 1/AA/419:424 | UNCG | homologous HL_5J7L_011 HL_34617.5 | |
HL_4V6P_012 | 1/AA/462:470 | No text annotation | ||
HL_4V6P_111 | 1/AA/522:527 | GNRA variation | homologous HL_5J7L_205 HL_37824.7 | |
HL_4V6P_014 | 1/AA/617:623 | No text annotation | homologous HL_6CZR_085 NA | |
HL_4V6P_015 | 1/AA/689:698 | No text annotation | homologous HL_5J7L_015 HL_75293.5 | |
HL_4V6P_016 | 1/AA/726:731 | GNRA | homologous HL_5J7L_016 HL_37824.7 | |
HL_4V6P_017 | 1/AA/786:796 | No text annotation | homologous HL_4LFB_017 HL_75293.5 | |
HL_4V6P_112 | 1/AA/840:846 | No text annotation | ||
HL_4V6P_019 | 1/AA/862:867 | GNRA | homologous HL_4LFB_019 HL_37824.7 | |
HL_4V6P_020 | 1/AA/897:902 | GNRA | homologous HL_4LFB_020 HL_37824.7 | |
HL_4V6P_021 | 1/AA/963:972 | No text annotation | homologous HL_4LFB_021 HL_50779.4 | |
HL_4V6P_022 | 1/AA/1012:1017 | GNRA | homologous HL_4LFB_022 HL_37824.7 | |
HL_4V6P_023 | 1/AA/1028:1033 | No text annotation | geometric HL_5U3G_001 HL_75660.5 | |
HL_4V6P_024 | 1/AA/1076:1081 | GNRA | homologous HL_5J7L_023 HL_37824.7 | |
HL_4V6P_025 | 1/AA/1089:1096 | T-loop related | homologous HL_5J7L_024 HL_77436.5 | |
HL_4V6P_026 | 1/AA/1134:1140 | No text annotation | homologous HL_4LFB_026 HL_87954.2 | |
HL_4V6P_027 | 1/AA/1165:1171 | GNRA | homologous HL_4LFB_027 HL_37824.7 | |
HL_4V6P_028 | 1/AA/1265:1270 | GNRA | homologous HL_4LFB_028 HL_37824.7 | |
HL_4V6P_029 | 1/AA/1314:1323 | T-loop with 3 stacked bulged bases | homologous HL_5J7L_028 HL_02887.3 | |
HL_4V6P_030 | 1/AA/1356:1366 | No text annotation | homologous HL_4LFB_030 HL_06226.4 | |
HL_4V6P_031 | 1/AA/1449:1454 | No text annotation | geometric HL_5U3G_001 HL_75660.5 | |
HL_4V6P_032 | 1/AA/1515:1520 | GNRA | homologous HL_6CZR_103 NA | |
HL_4V6P_033 | 1/AB/13:22 | No text annotation | homologous HL_2AKE_001 NA | |
HL_4V6P_034 | 1/AB/31:39 | tRNA anticodon loop | homologous HL_4V9Q_214 HL_06059.6 | |
HL_4V6P_035 | 1/AB/53:61 | T-loop with 2 stacked bulged bases | homologous HL_5UD5_003 HL_28252.8 | |
HL_4V6P_036 | 1/AD/13:23 | tRNA D-loop | homologous HL_6JXM_001 HL_20811.4 | |
HL_4V6P_037 | 1/AD/32:40 | No text annotation | homologous HL_6PMO_004 NA | |
HL_4V6P_038 | 1/AD/54:62 | T-loop with 2 stacked bulged bases | homologous HL_1IL2_003 HL_28252.8 | |
HL_4V6P_039 | 1/BA/38:44 | No text annotation | geometric HL_5NFV_001 HL_69752.2 | |
HL_4V6P_040 | 1/BA/85:91 | No text annotation | geometric HL_2ZNI_001 HL_75660.5 | |
HL_4V6P_041 | 1/BB/59:68 | No text annotation | homologous HL_7RQB_001 NA | |
HL_4V6P_113 | 1/BB/87:95 | No text annotation | homologous HL_5J7L_135 HL_80241.1 | |
HL_4V6P_043 | 1/BB/123:128 | No text annotation | homologous HL_4WF9_003 HL_75660.5 | |
HL_4V6P_044 | 1/BB/137:142 | UNCG | geometric HL_6CK5_001 HL_34617.5 | |
HL_4V6P_045 | 1/BB/158:168 | No text annotation | homologous HL_5J7L_138 HL_68257.1 | |
HL_4V6P_114 | 1/BB/188:208 | No text annotation | ||
HL_4V6P_046 | 1/BB/194:201 | No text annotation | homologous HL_7RQB_006 NA | |
HL_4V6P_047 | 1/BB/225:230 | No text annotation | homologous HL_5J7L_140 HL_62934.1 | |
HL_4V6P_048 | 1/BB/246:252 | No text annotation | homologous HL_7A0S_008 HL_37369.2 | |
HL_4V6P_049 | 1/BB/305:312 | T-loop with 1 bulged base | homologous HL_7A0S_010 HL_01609.3 | |
HL_4V6P_050 | 1/BB/319:323 | No text annotation | homologous HL_5J7L_143 HL_75660.5 | |
HL_4V6P_051 | 1/BB/327:335 | T-loop with unstacked turn | homologous HL_5J7L_144 HL_27670.2 | |
HL_4V6P_117 | 1/BB/382:392 | No text annotation | homologous HL_5J7L_145 HL_91503.7 | |
HL_4V6P_053 | 1/BB/410:417 | No text annotation | homologous HL_7RQB_014 NA | |
HL_4V6P_054 | 1/BB/462:467 | GNRA | homologous HL_7RQB_015 NA | |
HL_4V6P_055 | 1/BB/487:493 | GNRA | homologous HL_4WF9_016 HL_37824.7 | |
HL_4V6P_056 | 1/BB/543:550 | No text annotation | ||
HL_4V6P_057 | 1/BB/564:577 | No text annotation | ||
HL_4V6P_058 | 1/BB/611:617 | No text annotation | homologous HL_5J7L_151 HL_80922.2 | |
HL_4V6P_059 | 1/BB/629:634 | GNRA | homologous HL_5J7L_152 HL_37824.7 | |
HL_4V6P_118 | 1/BB/641:647 | GNRA | homologous HL_9DFE_019 HL_37824.7 | |
HL_4V6P_061 | 1/BB/712:719 | GNRA wlth tandem sheared | homologous HL_5J7L_154 HL_81538.2 | |
HL_4V6P_062 | 1/BB/744:753 | No text annotation | homologous HL_5J7L_155 HL_88205.2 | |
HL_4V6P_063 | 1/BB/779:785 | UNCG variation | geometric HL_1P6V_001 HL_53890.2 | |
HL_4V6P_064 | 1/BB/826:831 | No text annotation | homologous HL_7RQB_025 NA | |
HL_4V6P_065 | 1/BB/885:891 | No text annotation | ||
HL_4V6P_066 | 1/BB/954:963 | No text annotation | homologous HL_5J7L_159 NA | |
HL_4V6P_067 | 1/BB/978:985 | No text annotation | geometric HL_2ZNI_001 HL_75660.5 | |
HL_4V6P_068 | 1/BB/1064:1074 | No text annotation | homologous HL_5J7L_161 HL_19210.3 | |
HL_4V6P_069 | 1/BB/1092:1099 | No text annotation | homologous HL_7A0S_029 HL_77436.5 | |
HL_4V6P_070 | 1/BB/1172:1177 | Externally structured | geometric HL_8C3A_022 NA | |
HL_4V6P_071 | 1/BB/1222:1227 | GNRA | homologous HL_5J7L_164 HL_37824.7 | |
HL_4V6P_072 | 1/BB/1281:1289 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_165 HL_28252.8 | |
HL_4V6P_073 | 1/BB/1324:1330 | Pseudoknot geometry with 3' bulge | homologous HL_7A0S_033 HL_57176.2 | |
HL_4V6P_074 | 1/BB/1363:1368 | GNRA | homologous HL_5J7L_167 HL_37824.7 | |
HL_4V6P_075 | 1/BB/1389:1398 | No text annotation | ||
HL_4V6P_076 | 1/BB/1450:1461 | No text annotation | ||
HL_4V6P_077 | 1/BB/1492:1498 | No text annotation | homologous HL_7A0S_037 HL_39243.1 | |
HL_4V6P_119 | 1/BB/1533:1538 | UNCG | homologous HL_5J7L_171 HL_34617.5 | |
HL_4V6P_079 | 1/BB/1565:1568 | Externally structured | geometric HL_5TBW_022 NA | |
HL_4V6P_080 | 1/BB/1612:1619 | No text annotation | homologous HL_5J7L_173 HL_89567.2 | |
HL_4V6P_081 | 1/BB/1630:1636 | GNRA | homologous HL_5J7L_174 HL_37824.7 | |
HL_4V6P_082 | 1/BB/1691:1696 | UNCG | geometric HL_1KUQ_001 HL_34617.5 | |
HL_4V6P_083 | 1/BB/1728:1731 | No text annotation | homologous HL_5J7L_176 HL_32346.4 | |
HL_4V6P_084 | 1/BB/1752:1756 | No text annotation | homologous HL_5J7L_177 HL_80709.3 | |
HL_4V6P_085 | 1/BB/1777:1787 | No text annotation | homologous HL_7RQB_045 NA | |
HL_4V6P_086 | 1/BB/1806:1811 | No text annotation | homologous HL_4WF9_044 NA | |
HL_4V6P_087 | 1/BB/1868:1873 | GNRA | geometric HL_3V7E_003 HL_37824.7 | |
HL_4V6P_088 | 1/BB/1910:1920 | No text annotation | homologous HL_5J7L_181 HL_25847.2 | |
HL_4V6P_089 | 1/BB/1949:1957 | No text annotation | homologous HL_7A0S_048 HL_20167.2 | |
HL_4V6P_090 | 1/BB/2027:2036 | No text annotation | homologous HL_5J7L_183 HL_61996.2 | |
HL_4V6P_120 | 1/BB/2142:2149 | No text annotation | ||
HL_4V6P_092 | 1/BB/2209:2215 | No text annotation | homologous HL_5J7L_185 HL_49922.4 | |
HL_4V6P_093 | 1/BB/2248:2256 | No text annotation | homologous HL_7RQB_053 NA | |
HL_4V6P_094 | 1/BB/2264:2276 | No text annotation | ||
HL_4V6P_095 | 1/BB/2303:2313 | No text annotation | geometric HL_8C3A_039 NA | |
HL_4V6P_096 | 1/BB/2324:2331 | Pseudoknot geometry | homologous HL_5J7L_189 HL_93324.4 | |
HL_4V6P_097 | 1/BB/2356:2361 | GNRA | homologous HL_5J7L_190 HL_37824.7 | |
HL_4V6P_098 | 1/BB/2374:2379 | GNRA | homologous HL_4WF9_054 HL_37824.7 | |
HL_4V6P_099 | 1/BB/2404:2413 | No text annotation | homologous HL_7A0S_058 HL_53454.2 | |
HL_4V6P_100 | 1/BB/2471:2479 | No text annotation | homologous HL_7RQB_060 NA | |
HL_4V6P_101 | 1/BB/2528:2535 | No text annotation | homologous HL_7RQB_061 NA | |
HL_4V6P_102 | 1/BB/2551:2557 | No text annotation | homologous HL_5J7L_195 HL_30068.2 | |
HL_4V6P_103 | 1/BB/2594:2599 | GNRA | homologous HL_7RQB_063 NA | |
HL_4V6P_104 | 1/BB/2658:2663 | GNRA | geometric HL_3IGI_006 HL_37824.7 | |
HL_4V6P_105 | 1/BB/2701:2706 | Ribsomal LSU H95 | homologous HL_7A0S_064 HL_65794.5 | |
HL_4V6P_106 | 1/BB/2745:2759 | No text annotation | homologous HL_5J7L_199 HL_74055.2 | |
HL_4V6P_107 | 1/BB/2796:2800 | Mini UNCG | geometric HL_4V88_192 NA | |
HL_4V6P_121 | 1/BB/2819:2827 | No text annotation | homologous HL_5J7L_201 HL_64690.6 | |
HL_4V6P_109 | 1/BB/2856:2861 | No text annotation | geometric HL_5U3G_001 HL_75660.5 |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
HL_4V6P_013 | No text annotation | ||
HL_4V6P_018 | No text annotation | ||
HL_4V6P_042 | No text annotation | ||
HL_4V6P_052 | No text annotation | ||
HL_4V6P_060 | tRNA anticodon loop | ||
HL_4V6P_115 | No text annotation | ||
HL_4V6P_078 | No text annotation | ||
HL_4V6P_091 | No text annotation | ||
HL_4V6P_116 | No text annotation | ||
HL_4V6P_108 | No text annotation |
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
IL_4V6P_001 | 1/AA/30:33, 1/AA/551:553 | Isolated non-canonical cWW pair | geometric IL_4V88_472 NA | |
IL_4V6P_002 | 1/AA/44:45, 1/AA/396:398 | Single bulged A | homologous IL_4LFB_002 IL_31462.6 | |
IL_4V6P_003 | 1/AA/47:52, 1/AA/359:361 | No text annotation | homologous IL_6CZR_115 NA | |
IL_4V6P_004 | 1/AA/54:56, 1/AA/356:357 | Minor groove platform | homologous IL_4LFB_004 IL_51454.3 | |
IL_4V6P_005 | 1/AA/63:66, 1/AA/103:104 | Multiple bulged bases | homologous IL_6CZR_117 NA | |
IL_4V6P_006 | 1/AA/67:69, 1/AA/99:102 | Minor groove platform with extra cWW | homologous IL_5J7L_006 IL_90351.1 | |
IL_4V6P_007 | 1/AA/70:73, 1/AA/97:98 | Minor groove platform | homologous IL_5J7L_007 IL_15052.4 | |
IL_4V6P_008 | 1/AA/75:77, 1/AA/92:95 | Single bulged G, near cWW | homologous IL_5J7L_008 NA | |
IL_4V6P_172 | 1/AA/128:131, 1/AA/231:233 | Isolated non-canonical cWW pair | homologous IL_5J7L_009 IL_57744.1 | |
IL_4V6P_010 | 1/AA/132:136, 1/AA/227:230 | No text annotation | ||
IL_4V6P_011 | 1/AA/144:146, 1/AA/176:178 | Isolated cWH basepair | homologous IL_5J7L_011 IL_10167.6 | |
IL_4V6P_174 | 1/AA/147:153, 1/AA/168:175 | tWH-tWH-tHW-tHW | homologous IL_5J7L_012 IL_80604.6 | |
IL_4V6P_213 | 1/AA/203:206, 1/AA/213:214 | No text annotation | ||
IL_4V6P_014 | 1/AA/242:247, 1/AA/277:284 | Kink-turn with non-sequential stacking | homologous IL_4LFB_011 IL_46174.3 | |
IL_4V6P_214 | 1/AA/248:252, 1/AA/274:276 | No text annotation | ||
IL_4V6P_016 | 1/AA/292:293, 1/AA/304:308 | No text annotation | ||
IL_4V6P_017 | 1/AA/367:369, 1/AA/392:393 | Single bulged U | homologous IL_5J7L_017 IL_89505.4 | |
IL_4V6P_215 | 1/AA/371:375, 1/AA/389:390 | C-loop | homologous IL_4LFB_015 IL_03109.3 | |
IL_4V6P_216 | 1/AA/375:376, 1/AA/387:389 | Single bulged G | homologous IL_5J7L_019 IL_00225.13 | |
IL_4V6P_177 | 1/AA/409:416, 1/AA/427:433 | No text annotation | ||
IL_4V6P_020 | 1/AA/440:442, 1/AA/492:497 | Other IL | geometric IL_4PDB_001 IL_36516.3 | |
IL_4V6P_021 | 1/AA/446:450, 1/AA/483:488 | tSH-tHW-tWW | geometric IL_5J7L_022 IL_88269.4 | |
IL_4V6P_022 | 1/AA/450:455, 1/AA/477:483 | No text annotation | homologous IL_5J7L_023 IL_70801.1 | |
IL_4V6P_217 | 1/AA/457:460, 1/AA/471:475 | No text annotation | ||
IL_4V6P_024 | 1/AA/460:462, 1/AA/470:471 | Single stack bend | geometric IL_7KGA_006 IL_26793.1 | |
IL_4V6P_025 | 1/AA/504:511, 1/AA/540:541 | SSU/LSU pseudoknot | homologous IL_5J7L_024 IL_41203.4 | |
IL_4V6P_026 | 1/AA/515:521, 1/AA/528:536 | Kink-turn related | homologous IL_4LFB_021 IL_54177.4 | |
IL_4V6P_027 | 1/AA/569:575, 1/AA/880:881 | No text annotation | homologous IL_4LFB_022 IL_38186.6 | |
IL_4V6P_178 | 1/AA/580:584, 1/AA/757:761 | tSH-tHW-tHS | homologous IL_5J7L_027 IL_17136.7 | |
IL_4V6P_029 | 1/AA/594:596, 1/AA/644:645 | Major groove platform | homologous IL_5J7L_028 IL_48076.6 | |
IL_4V6P_030 | 1/AA/597:598, 1/AA/640:643 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_029 IL_68140.4 | |
IL_4V6P_179 | 1/AA/605:612, 1/AA/628:633 | No text annotation | ||
IL_4V6P_032 | 1/AA/654:655, 1/AA/751:754 | Major groove platform; stack outside cWW | geometric IL_5J7L_031 IL_50694.7 | |
IL_4V6P_033 | 1/AA/659:660, 1/AA/745:747 | Single stack bend | homologous IL_5J7L_032 IL_26793.1 | |
IL_4V6P_034 | 1/AA/662:666, 1/AA/740:743 | Tandem non-canonical cWW pairs | homologous IL_5J7L_033 IL_85033.2 | |
IL_4V6P_035 | 1/AA/673:678, 1/AA/712:717 | No text annotation | geometric IL_4LFB_030 NA | |
IL_4V6P_036 | 1/AA/684:688, 1/AA/699:706 | Kink-turn | homologous IL_5J7L_035 IL_01488.3 | |
IL_4V6P_180 | 1/AA/769:771, 1/AA/808:810 | No text annotation | geometric IL_5E81_401 IL_42997.3 | |
IL_4V6P_037 | 1/AA/774:778, 1/AA/804:805 | Left turn | homologous IL_4LFB_032 IL_29346.2 | |
IL_4V6P_038 | 1/AA/779:783, 1/AA/799:803 | tSH-tHW-tHS | homologous IL_4LFB_033 IL_17136.7 | |
IL_4V6P_039 | 1/AA/887:896, 1/AA/903:910 | 10x8 Sarcin-Ricin; G-bulge | geometric IL_6UFG_002 IL_43547.1 | |
IL_4V6P_182 | 1/AA/922:923, 1/AA/1393:1395 | Single bulged A | homologous IL_5J7L_039 IL_31462.6 | |
IL_4V6P_218 | 1/AA/925:927, 1/AA/1390:1391 | Single bulged G | homologous IL_5J7L_040 IL_00225.13 | |
IL_4V6P_042 | 1/AA/933:935, 1/AA/1380:1384 | Minor groove platform | homologous IL_5J7L_041 IL_47078.3 | |
IL_4V6P_043 | 1/AA/953:954, 1/AA/1226:1228 | Minor groove platform | homologous IL_4LFB_038 IL_51454.3 | |
IL_4V6P_044 | 1/AA/993:997, 1/AA/1044:1045 | Minor groove platform | geometric IL_5J7L_043 IL_47078.3 | |
IL_4V6P_045 | 1/AA/998:999, 1/AA/1041:1043 | Single stack bend | homologous IL_5J7L_044 IL_26793.1 | |
IL_4V6P_183 | 1/AA/1048:1051, 1/AA/1207:1209 | Isolated non-canonical cWW pair | geometric IL_7VYX_001 IL_87907.2 | |
IL_4V6P_184 | 1/AA/1052:1056, 1/AA/1204:1206 | No text annotation | geometric IL_8C3A_456 NA | |
IL_4V6P_219 | 1/AA/1057:1058, 1/AA/1199:1203 | Minor groove platform | homologous IL_4LFB_045 IL_95583.2 | |
IL_4V6P_048 | 1/AA/1060:1061, 1/AA/1195:1197 | Single bulged A | geometric IL_5J7L_049 IL_31462.6 | |
IL_4V6P_049 | 1/AA/1061:1063, 1/AA/1193:1195 | No text annotation | geometric IL_4V88_448 NA | |
IL_4V6P_050 | 1/AA/1124:1128, 1/AA/1144:1149 | No text annotation | homologous IL_5J7L_051 IL_06691.1 | |
IL_4V6P_051 | 1/AA/1129:1132, 1/AA/1142:1143 | Minor groove platform | homologous IL_5J7L_052 IL_15052.4 | |
IL_4V6P_220 | 1/AA/1158:1161, 1/AA/1175:1181 | No text annotation | ||
IL_4V6P_053 | 1/AA/1247:1253, 1/AA/1284:1290 | No text annotation | homologous IL_5J7L_054 IL_09129.2 | |
IL_4V6P_054 | 1/AA/1255:1258, 1/AA/1277:1282 | No text annotation | ||
IL_4V6P_055 | 1/AA/1259:1263, 1/AA/1272:1276 | Triple sheared | homologous IL_5J7L_056 IL_17948.2 | |
IL_4V6P_056 | 1/AA/1303:1308, 1/AA/1329:1334 | Quadruple sheared | geometric IL_5LR3_002 IL_06136.2 | |
IL_4V6P_057 | 1/AA/1399:1401, 1/AA/1501:1504 | No text annotation | homologous IL_5J7L_058 IL_61438.4 | |
IL_4V6P_058 | 1/AA/1401:1404, 1/AA/1497:1501 | No text annotation | geometric IL_4V88_464 NA | |
IL_4V6P_186 | 1/AA/1405:1407, 1/AA/1494:1496 | Isolated non-canonical cWW pair | homologous IL_5J7L_363 IL_87907.2 | |
IL_4V6P_187 | 1/AA/1407:1409, 1/AA/1491:1494 | No text annotation | homologous IL_5J7L_364 IL_90351.1 | |
IL_4V6P_221 | 1/AA/1412:1414, 1/AA/1486:1488 | Isolated non-canonical cWW pair | homologous IL_4LFB_059 IL_87907.2 | |
IL_4V6P_061 | 1/AA/1416:1420, 1/AA/1480:1484 | No text annotation | ||
IL_4V6P_062 | 1/AA/1430:1435, 1/AA/1466:1470 | Triple sheared related | homologous IL_5J7L_063 IL_80231.1 | |
IL_4V6P_222 | 1/AA/1439:1443, 1/AA/1459:1462 | No text annotation | ||
IL_4V6P_064 | 1/AA/1445:1448, 1/AA/1455:1457 | No text annotation | homologous IL_5J7L_065 IL_31531.3 | |
IL_4V6P_065 | 1/BA/17:18, 1/BA/65:67 | Major groove intercalation | homologous IL_7RQB_111 NA | |
IL_4V6P_066 | 1/BA/23:28, 1/BA/56:60 | No text annotation | homologous IL_7A0S_103 IL_18472.4 | |
IL_4V6P_067 | 1/BA/30:31, 1/BA/51:54 | Minor groove platform | geometric IL_3MXH_005 IL_15052.4 | |
IL_4V6P_068 | 1/BA/34:38, 1/BA/44:48 | Symmetric double minor groove platform | homologous IL_7RQB_114 NA | |
IL_4V6P_069 | 1/BA/71:79, 1/BA/97:105 | Bacterial 5S Loop E | homologous IL_7RQB_115 NA | |
IL_4V6P_189 | 1/BB/23:30, 1/BB/510:517 | No text annotation | ||
IL_4V6P_070 | 1/BB/24:30, 1/BB/510:516 | No text annotation | ||
IL_4V6P_071 | 1/BB/36:37, 1/BB/442:444 | Single bulged A | homologous IL_7A0S_002 IL_31462.6 | |
IL_4V6P_072 | 1/BB/43:44, 1/BB/434:436 | Minor groove platform | homologous IL_7RQB_003 NA | |
IL_4V6P_223 | 1/BB/81:85, 1/BB/97:105 | No text annotation | ||
IL_4V6P_074 | 1/BB/183:184, 1/BB/212:214 | Single stack bend | homologous IL_4WF9_007 IL_90729.1 | |
IL_4V6P_075 | 1/BB/188:194, 1/BB/201:208 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_5J7L_250 IL_04346.10 | |
IL_4V6P_076 | 1/BB/239:245, 1/BB/253:258 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_5J7L_251 IL_26307.2 | |
IL_4V6P_077 | 1/BB/269:271, 1/BB/366:370 | No text annotation | ||
IL_4V6P_078 | 1/BB/274:281, 1/BB/359:363 | No text annotation | homologous IL_5J7L_253 IL_77870.1 | |
IL_4V6P_079 | 1/BB/293:295, 1/BB/343:347 | No text annotation | homologous IL_4WF9_014 IL_69440.3 | |
IL_4V6P_080 | 1/BB/481:484, 1/BB/496:509 | No text annotation | homologous IL_5J7L_255 IL_81516.2 | |
IL_4V6P_081 | 1/BB/536:539, 1/BB/554:557 | Double sheared | homologous IL_4WF9_016 IL_09705.15 | |
IL_4V6P_082 | 1/BB/606:610, 1/BB/618:622 | AAA cross-strand stack | homologous IL_5J7L_258 IL_66798.2 | |
IL_4V6P_190 | 1/BB/672:674, 1/BB/806:808 | Isolated non-canonical cWW pair | homologous IL_5J7L_259 IL_87907.2 | |
IL_4V6P_084 | 1/BB/674:678, 1/BB/799:806 | tHW-tHW cross-strand stack | homologous IL_5J7L_260 IL_54041.2 | |
IL_4V6P_086 | 1/BB/697:698, 1/BB/763:765 | Single bulged A | homologous IL_5J7L_261 IL_31462.6 | |
IL_4V6P_087 | 1/BB/702:707, 1/BB/724:730 | Quadruple sheared | geometric IL_3R9W_001 IL_06136.2 | |
IL_4V6P_088 | 1/BB/738:740, 1/BB/757:758 | Major groove platform | homologous IL_5J7L_264 IL_48076.6 | |
IL_4V6P_089 | 1/BB/775:777, 1/BB/787:791 | Multiple bulged bases | geometric IL_7RQB_023 NA | |
IL_4V6P_090 | 1/BB/843:845, 1/BB/934:935 | Single stack bend | geometric IL_5J7L_249 IL_90729.1 | |
IL_4V6P_091 | 1/BB/845:848, 1/BB/930:934 | No text annotation | ||
IL_4V6P_224 | 1/BB/850:851, 1/BB/926:928 | Single stack bend | homologous IL_5J7L_269 IL_26793.1 | |
IL_4V6P_093 | 1/BB/856:862, 1/BB/915:921 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_5J7L_270 IL_29198.2 | |
IL_4V6P_094 | 1/BB/862:868, 1/BB/909:915 | No text annotation | ||
IL_4V6P_095 | 1/BB/870:872, 1/BB/905:907 | Isolated non-canonical cWW pair | homologous IL_5J7L_273 IL_28037.2 | |
IL_4V6P_096 | 1/BB/875:879, 1/BB/898:902 | Triple sheared | homologous IL_5J7L_274 IL_17948.2 | |
IL_4V6P_097 | 1/BB/880:884, 1/BB/892:897 | No text annotation | ||
IL_4V6P_225 | 1/BB/994:996, 1/BB/1159:1160 | Single bulged C | homologous IL_9DFE_034 IL_61258.15 | |
IL_4V6P_099 | 1/BB/998:1002, 1/BB/1153:1157 | UAA/GAN | homologous IL_5J7L_277 IL_38507.2 | |
IL_4V6P_226 | 1/BB/1004:1011, 1/BB/1150:1151 | SSU/LSU pseudoknot | homologous IL_4WF9_037 IL_41203.4 | |
IL_4V6P_101 | 1/BB/1011:1013, 1/BB/1149:1150 | Single bulged U | geometric IL_5J7L_279 IL_89505.4 | |
IL_4V6P_102 | 1/BB/1018:1024, 1/BB/1140:1144 | Kink-turn related | homologous IL_4WF9_039 IL_57188.5 | |
IL_4V6P_103 | 1/BB/1024:1030, 1/BB/1124:1140 | No text annotation | geometric IL_5J7L_281 IL_50715.3 | |
IL_4V6P_104 | 1/BB/1031:1034, 1/BB/1121:1123 | Isolated non-canonical cWW pair | homologous IL_4WF9_041 IL_57744.1 | |
IL_4V6P_193 | 1/BB/1038:1041, 1/BB/1114:1117 | Tandem non-canonical cWW pairs | homologous IL_5J7L_283 IL_85033.2 | |
IL_4V6P_106 | 1/BB/1043:1051, 1/BB/1108:1112 | Kink-turn | homologous IL_5J7L_284 IL_99692.2 | |
IL_4V6P_227 | 1/BB/1043:1052, 1/BB/1107:1112 | No text annotation | ||
IL_4V6P_107 | 1/BB/1059:1062, 1/BB/1076:1079 | No text annotation | ||
IL_4V6P_108 | 1/BB/1087:1090, 1/BB/1101:1102 | Major groove platform | geometric IL_3OXE_003 IL_48076.6 | |
IL_4V6P_228 | 1/BB/1196:1198, 1/BB/1247:1250 | Isolated cWS basepair | homologous IL_5J7L_286 IL_42997.3 | |
IL_4V6P_196 | 1/BB/1202:1206, 1/BB/1240:1243 | No text annotation | homologous IL_9DFE_045 IL_68574.4 | |
IL_4V6P_111 | 1/BB/1208:1215, 1/BB/1234:1238 | Kink-turn | homologous IL_5J7L_288 IL_70923.9 | |
IL_4V6P_112 | 1/BB/1262:1269, 1/BB/2011:2017 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5J7L_289 IL_04346.10 | |
IL_4V6P_113 | 1/BB/1310:1313, 1/BB/1603:1604 | Major groove platform; stack outside cWW | homologous IL_5J7L_290 IL_50694.7 | |
IL_4V6P_229 | 1/BB/1319:1323, 1/BB/1331:1333 | No text annotation | ||
IL_4V6P_198 | 1/BB/1351:1355, 1/BB/1376:1380 | UAA/GAN | homologous IL_5J7L_292 IL_89021.2 | |
IL_4V6P_115 | 1/BB/1357:1361, 1/BB/1370:1374 | tSH-tHW-tHS | homologous IL_5J7L_293 IL_17136.7 | |
IL_4V6P_116 | 1/BB/1415:1416, 1/BB/1582:1587 | No text annotation | homologous IL_5J7L_294 IL_87211.1 | |
IL_4V6P_117 | 1/BB/1417:1421, 1/BB/1577:1581 | UAA/GAN | homologous IL_5J7L_295 IL_38507.2 | |
IL_4V6P_118 | 1/BB/1432:1435, 1/BB/1557:1561 | Tandem non-canonical cWW pairs | homologous IL_5J7L_296 IL_58112.2 | |
IL_4V6P_199 | 1/BB/1437:1440, 1/BB/1551:1555 | tSH-tHW | homologous IL_7A0S_053 IL_99646.2 | |
IL_4V6P_120 | 1/BB/1468:1471, 1/BB/1520:1524 | No text annotation | homologous IL_5J7L_299 IL_68574.4 | |
IL_4V6P_200 | 1/BB/1474:1478, 1/BB/1513:1517 | tSH-tHW-tHS | homologous IL_5J7L_300 IL_38862.4 | |
IL_4V6P_122 | 1/BB/1481:1482, 1/BB/1507:1510 | No text annotation | ||
IL_4V6P_123 | 1/BB/1489:1491, 1/BB/1499:1500 | Single bulged A | geometric IL_5J7L_064 IL_31462.6 | |
IL_4V6P_124 | 1/BB/1526:1529, 1/BB/1542:1546 | UAA/GAN variation | homologous IL_5J7L_303 IL_23774.1 | |
IL_4V6P_125 | 1/BB/1651:1656, 1/BB/2004:2006 | No text annotation | homologous IL_7RQB_064 NA | |
IL_4V6P_126 | 1/BB/1663:1665, 1/BB/1995:1997 | Isolated tWW turn | homologous IL_4WF9_063 IL_67095.2 | |
IL_4V6P_127 | 1/BB/1666:1669, 1/BB/1993:1994 | Major groove platform; stack outside cWW | geometric IL_4LFB_027 IL_50694.7 | |
IL_4V6P_201 | 1/BB/1666:1674, 1/BB/1990:1994 | No text annotation | homologous IL_9DFE_066 IL_22854.4 | |
IL_4V6P_128 | 1/BB/1669:1674, 1/BB/1990:1993 | Intercalated tWH | homologous IL_7RQB_067 NA | |
IL_4V6P_129 | 1/BB/1686:1691, 1/BB/1696:1702 | tSH-tSH-tHH-tHS | homologous IL_7A0S_063 IL_47346.2 | |
IL_4V6P_130 | 1/BB/1712:1718, 1/BB/1742:1746 | 6x5 Sarcin-Ricin; G-bulge | homologous IL_5J7L_309 IL_88269.4 | |
IL_4V6P_131 | 1/BB/1720:1725, 1/BB/1735:1740 | Triple sheared with non-canonical cWW | geometric IL_7A0S_018 IL_06136.2 | |
IL_4V6P_132 | 1/BB/1727:1728, 1/BB/1731:1733 | Single bulged C | geometric IL_5J7L_311 IL_61258.15 | |
IL_4V6P_133 | 1/BB/1770:1771, 1/BB/1980:1982 | Single bulged A | homologous IL_7A0S_064 IL_31462.6 | |
IL_4V6P_134 | 1/BB/1798:1804, 1/BB/1813:1821 | Kink-turn related | homologous IL_5J7L_313 IL_17069.5 | |
IL_4V6P_135 | 1/BB/1837:1840, 1/BB/1902:1903 | No text annotation | homologous IL_4WF9_070 NA | |
IL_4V6P_202 | 1/BB/1837:1842, 1/BB/1898:1903 | No text annotation | ||
IL_4V6P_136 | 1/BB/1840:1842, 1/BB/1898:1902 | Multiple bulged bases, near cWW | geometric IL_5M0H_002 NA | |
IL_4V6P_203 | 1/BB/1846:1860, 1/BB/1882:1894 | No text annotation | ||
IL_4V6P_137 | 1/BB/1864:1867, 1/BB/1874:1878 | UAA/GAN | homologous IL_4WF9_075 IL_77691.5 | |
IL_4V6P_138 | 1/BB/1933:1934, 1/BB/1964:1967 | Major groove intercalation | geometric IL_1U9S_003 IL_82107.4 | |
IL_4V6P_139 | 1/BB/1934:1945, 1/BB/1961:1964 | No text annotation | homologous IL_7A0S_072 IL_04332.3 | |
IL_4V6P_140 | 1/BB/2050:2052, 1/BB/2617:2618 | Major groove platform | homologous IL_5J7L_320 IL_48076.6 | |
IL_4V6P_230 | 1/BB/2054:2056, 1/BB/2612:2615 | No text annotation | homologous IL_5J7L_321 IL_83389.2 | |
IL_4V6P_204 | 1/BB/2067:2069, 1/BB/2442:2443 | Single bulged U | homologous IL_7A0S_075 IL_89505.4 | |
IL_4V6P_205 | 1/BB/2069:2071, 1/BB/2438:2442 | No text annotation | ||
IL_4V6P_144 | 1/BB/2081:2083, 1/BB/2236:2239 | Isolated tHS basepair with bulges | homologous IL_5J7L_325 IL_85599.2 | |
IL_4V6P_206 | 1/BB/2085:2087, 1/BB/2232:2234 | Isolated non-canonical cWW pair | homologous IL_5J7L_326 IL_28037.2 | |
IL_4V6P_146 | 1/BB/2103:2105, 1/BB/2184:2186 | Isolated near basepair | geometric IL_4V88_406 NA | |
IL_4V6P_147 | 1/BB/2106:2110, 1/BB/2179:2183 | No text annotation | ||
IL_4V6P_148 | 1/BB/2110:2120, 1/BB/2177:2179 | No text annotation | ||
IL_4V6P_149 | 1/BB/2120:2123, 1/BB/2175:2177 | Other IL | geometric IL_5TBW_064 NA | |
IL_4V6P_150 | 1/BB/2124:2128, 1/BB/2160:2174 | No text annotation | ||
IL_4V6P_207 | 1/BB/2124:2136, 1/BB/2155:2174 | No text annotation | ||
IL_4V6P_151 | 1/BB/2128:2136, 1/BB/2155:2160 | No text annotation | ||
IL_4V6P_152 | 1/BB/2202:2204, 1/BB/2220:2221 | Single bulged U | geometric IL_6UFH_004 IL_89505.4 | |
IL_4V6P_153 | 1/BB/2350:2353, 1/BB/2364:2367 | Double sheared | homologous IL_4WF9_087 IL_09705.15 | |
IL_4V6P_154 | 1/BB/2401:2403, 1/BB/2414:2415 | Major groove platform | homologous IL_7A0S_082 IL_48076.6 | |
IL_4V6P_208 | 1/BB/2454:2455, 1/BB/2496:2498 | Major groove platform | homologous IL_9DFE_092 IL_48076.6 | |
IL_4V6P_209 | 1/BB/2457:2461, 1/BB/2489:2494 | No text annotation | ||
IL_4V6P_156 | 1/BB/2466:2470, 1/BB/2480:2484 | Triple sheared | homologous IL_5J7L_338 IL_17948.2 | |
IL_4V6P_157 | 1/BB/2507:2509, 1/BB/2579:2582 | No text annotation | homologous IL_5J7L_339 NA | |
IL_4V6P_158 | 1/BB/2510:2512, 1/BB/2574:2578 | Isolated non-canonical cWW with bulges | geometric IL_7RQB_097 NA | |
IL_4V6P_159 | 1/BB/2512:2513, 1/BB/2571:2574 | No text annotation | homologous IL_5J7L_341 IL_42626.2 | |
IL_4V6P_210 | 1/BB/2521:2523, 1/BB/2540:2544 | No text annotation | ||
IL_4V6P_211 | 1/BB/2524:2526, 1/BB/2537:2539 | Isolated near basepair | geometric IL_4V88_406 NA | |
IL_4V6P_161 | 1/BB/2591:2592, 1/BB/2601:2603 | Single bulged A | geometric IL_6WPI_001 IL_31462.6 | |
IL_4V6P_162 | 1/BB/2636:2640, 1/BB/2774:2782 | tSH-tHS-tHW | homologous IL_4WF9_099 IL_04638.3 | |
IL_4V6P_163 | 1/BB/2652:2658, 1/BB/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge | homologous IL_7RQB_103 NA | |
IL_4V6P_164 | 1/BB/2680:2684, 1/BB/2725:2727 | C-loop | homologous IL_7A0S_095 IL_63596.11 | |
IL_4V6P_165 | 1/BB/2687:2691, 1/BB/2718:2722 | No text annotation | homologous IL_4WF9_102 IL_23774.1 | |
IL_4V6P_166 | 1/BB/2695:2696, 1/BB/2711:2714 | Multiple bulged bases | homologous IL_7RQB_106 NA | |
IL_4V6P_167 | 1/BB/2737:2742, 1/BB/2762:2767 | UAA/GAN with extra cWW | homologous IL_5J7L_350 IL_49767.8 | |
IL_4V6P_168 | 1/BB/2806:2811, 1/BB/2889:2892 | No text annotation | homologous IL_5J7L_351 IL_29471.1 | |
IL_4V6P_169 | 1/BB/2838:2839, 1/BB/2878:2880 | Single bulged C | homologous IL_7RQB_108 NA | |
IL_4V6P_170 | 1/BB/2843:2846, 1/BB/2870:2874 | Multiple bulged bases with non-canonical cWW | homologous IL_5J7L_353 IL_64231.5 | |
IL_4V6P_171 | 1/BB/2847:2852, 1/BB/2865:2869 | tHS double platform | homologous IL_4WF9_108 IL_70411.2 |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
IL_4V6P_009 | No text annotation | ||
IL_4V6P_173 | Isolated near basepair | ||
IL_4V6P_012 | No text annotation | ||
IL_4V6P_013 | No text annotation | ||
IL_4V6P_175 | No text annotation | ||
IL_4V6P_015 | No text annotation | ||
IL_4V6P_176 | No text annotation | ||
IL_4V6P_018 | C-loop with extra cWW pair | ||
IL_4V6P_019 | No text annotation | ||
IL_4V6P_023 | Other IL | ||
IL_4V6P_028 | tSH-tHW-tHS-cWW | ||
IL_4V6P_031 | No text annotation | ||
IL_4V6P_181 | Isolated non-canonical cWW pair | ||
IL_4V6P_040 | Isolated non-canonical cWW with bulges | ||
IL_4V6P_041 | Isolated non-canonical cWW pair | ||
IL_4V6P_046 | No text annotation | ||
IL_4V6P_185 | No text annotation | ||
IL_4V6P_047 | No text annotation | ||
IL_4V6P_052 | No text annotation | ||
IL_4V6P_059 | No text annotation | ||
IL_4V6P_060 | Tandem non-canonical cWW pairs | ||
IL_4V6P_188 | No text annotation | ||
IL_4V6P_063 | No text annotation | ||
IL_4V6P_073 | No text annotation | ||
IL_4V6P_083 | Tandem non-canonical cWW pairs | ||
IL_4V6P_085 | No text annotation | ||
IL_4V6P_191 | No text annotation | ||
IL_4V6P_092 | No text annotation | ||
IL_4V6P_192 | Tandem non-canonical cWW pairs | ||
IL_4V6P_098 | Tandem non-canonical cWW pairs | ||
IL_4V6P_100 | Tandem non-canonical cWW pairs | ||
IL_4V6P_105 | No text annotation | ||
IL_4V6P_194 | No text annotation | ||
IL_4V6P_195 | No text annotation | ||
IL_4V6P_109 | Tandem non-canonical cWW pairs | ||
IL_4V6P_110 | No text annotation | ||
IL_4V6P_197 | No text annotation | ||
IL_4V6P_114 | No text annotation | ||
IL_4V6P_119 | No text annotation | ||
IL_4V6P_121 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | ||
IL_4V6P_141 | No text annotation | ||
IL_4V6P_142 | No text annotation | ||
IL_4V6P_143 | No text annotation | ||
IL_4V6P_145 | Tandem non-canonical cWW pairs | ||
IL_4V6P_155 | No text annotation | ||
IL_4V6P_160 | No text annotation | ||
IL_4V6P_231 | Isolated non-canonical cWW pair | ||
IL_4V6P_212 | Tandem non-canonical cWW pairs |
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
J3_4V6P_025 | 1/AA/46:47, 1/AA/361:367, 1/AA/393:395 | No text annotation | geometric J3_4LFB_010 J3_67856.4 | |
J3_4V6P_026 | 1/AA/46:52, 1/AA/359:367, 1/AA/393:395 | No text annotation | homologous J3_4LFB_014 J3_46317.4 | |
J3_4V6P_002 | 1/AA/586:588, 1/AA/651:654, 1/AA/754:755 | No text annotation | homologous J3_5J7L_002 J3_56052.5 | |
J3_4V6P_027 | 1/AA/586:588, 1/AA/651:655, 1/AA/751:755 | No text annotation | homologous J3_5J7L_051 J3_17385.4 | |
J3_4V6P_003 | 1/AA/672:673, 1/AA/717:725, 1/AA/732:734 | No text annotation | homologous J3_6CZR_017 NA | |
J3_4V6P_004 | 1/AA/826:829, 1/AA/857:861, 1/AA/868:874 | No text annotation | homologous J3_5J7L_004 J3_85054.4 | |
J3_4V6P_028 | 1/AA/936:939, 1/AA/1344:1350, 1/AA/1372:1379 | No text annotation | homologous J3_4LFB_002 J3_25303.4 | |
J3_4V6P_005 | 1/AA/941:946, 1/AA/1235:1237, 1/AA/1337:1342 | No text annotation | ||
J3_4V6P_006 | 1/AA/955:962, 1/AA/973:984, 1/AA/1221:1225 | No text annotation | homologous J3_5J7L_006 J3_83516.4 | |
J3_4V6P_007 | 1/AA/990:993, 1/AA/1045:1047, 1/AA/1210:1215 | No text annotation | homologous J3_6CZR_021 NA | |
J3_4V6P_029 | 1/AA/990:997, 1/AA/1044:1047, 1/AA/1210:1215 | No text annotation | homologous J3_4LFB_016 J3_76475.2 | |
J3_4V6P_008 | 1/AA/1003:1006, 1/AA/1023:1027, 1/AA/1034:1037 | No text annotation | ||
J3_4V6P_039 | 1/AA/1063:1068, 1/AA/1107:1113, 1/AA/1187:1193 | No text annotation | homologous J3_4LFB_007 J3_08394.3 | |
J3_4V6P_010 | 1/AA/1073:1074, 1/AA/1083:1087, 1/AA/1098:1102 | No text annotation | homologous J3_6CZR_024 NA | |
J3_4V6P_011 | 1/AA/1116:1119, 1/AA/1154:1158, 1/AA/1181:1184 | No text annotation | ||
J3_4V6P_040 | 1/AA/1116:1119, 1/AA/1154:1161, 1/AA/1175:1184 | No text annotation | ||
J3_4V6P_012 | 1/AA/1237:1241, 1/AA/1296:1303, 1/AA/1334:1337 | No text annotation | homologous J3_5J7L_011 J3_37047.6 | |
J3_4V6P_013 | 1/BA/10:16, 1/BA/68:70, 1/BA/106:110 | No text annotation | homologous J3_5J7L_049 J3_89095.1 | |
J3_4V6P_014 | 1/BB/30:31, 1/BB/474:481, 1/BB/509:510 | No text annotation | geometric J3_4V9F_011 J3_60031.2 | |
J3_4V6P_031 | 1/BB/30:31, 1/BB/474:484, 1/BB/496:510 | No text annotation | homologous J3_4WF9_011 J3_92134.2 | |
J3_4V6P_032 | 1/BB/32:35, 1/BB/445:461, 1/BB/468:473 | No text annotation | homologous J3_5J7L_067 J3_30040.2 | |
J3_4V6P_015 | 1/BB/55:57, 1/BB/70:76, 1/BB/110:115 | No text annotation | ||
J3_4V6P_033 | 1/BB/297:302, 1/BB/315:325, 1/BB/337:341 | No text annotation | ||
J3_4V6P_016 | 1/BB/683:689, 1/BB/773:775, 1/BB/791:794 | No text annotation | homologous J3_4WF9_002 J3_64189.2 | |
J3_4V6P_017 | 1/BB/698:700, 1/BB/732:736, 1/BB/760:763 | No text annotation | homologous J3_7A0S_005 J3_44724.7 | |
J3_4V6P_018 | 1/BB/1055:1059, 1/BB/1079:1087, 1/BB/1102:1104 | No text annotation | ||
J3_4V6P_034 | 1/BB/1055:1062, 1/BB/1076:1087, 1/BB/1102:1104 | No text annotation | ||
J3_4V6P_019 | 1/BB/1298:1303, 1/BB/1625:1628, 1/BB/1638:1642 | No text annotation | ||
J3_4V6P_020 | 1/BB/1306:1309, 1/BB/1605:1611, 1/BB/1620:1622 | No text annotation | homologous J3_7A0S_007 J3_71677.1 | |
J3_4V6P_035 | 1/BB/1344:1350, 1/BB/1381:1385, 1/BB/1402:1403 | No text annotation | ||
J3_4V6P_036 | 1/BB/1424:1430, 1/BB/1563:1565, 1/BB/1568:1574 | No text annotation | ||
J3_4V6P_021 | 1/BB/2091:2093, 1/BB/2196:2200, 1/BB/2223:2228 | Kink-turn in J3 | homologous J3_5J7L_044 J3_89368.5 | |
J3_4V6P_041 | 1/BB/2295:2299, 1/BB/2317:2323, 1/BB/2332:2337 | No text annotation | homologous J3_5J7L_071 J3_44961.1 | |
J3_4V6P_042 | 1/BB/2517:2520, 1/BB/2545:2547, 1/BB/2561:2567 | No text annotation | ||
J3_4V6P_023 | 1/BB/2789:2791, 1/BB/2805:2806, 1/BB/2892:2894 | No text annotation | homologous J3_5J7L_047 J3_30104.1 | |
J3_4V6P_038 | 1/BB/2812:2817, 1/BB/2829:2836, 1/BB/2882:2888 | No text annotation | ||
J4_4V6P_016 | 1/AA/115:123, 1/AA/238:240, 1/AA/286:289, 1/AA/311:312 | No text annotation | homologous J4_5J7L_001 J4_35578.3 | |
J4_4V6P_002 | 1/AA/142:144, 1/AA/178:184, 1/AA/193:198, 1/AA/219:221 | No text annotation | homologous J4_5J7L_002 J4_01665.1 | |
J4_4V6P_003 | 1/AA/575:577, 1/AA/764:769, 1/AA/810:821, 1/AA/879:880 | No text annotation | homologous J4_4LFB_003 J4_61885.6 | |
J4_4V6P_017 | 1/AB/7:10, 1/AB/25:27, 1/AB/43:49, 1/AB/65:66 | No text annotation | ||
J4_4V6P_005 | 1/AD/7:10, 1/AD/26:28, 1/AD/44:50, 1/AD/66:67 | tRNA junction | homologous J4_4V9Q_031 J4_70449.28 | |
J4_4V6P_006 | 1/BB/268:269, 1/BB/370:375, 1/BB/399:406, 1/BB/421:424 | No text annotation | homologous J4_9DFE_001 J4_45801.6 | |
J4_4V6P_007 | 1/BB/297:302, 1/BB/315:319, 1/BB/323:325, 1/BB/337:341 | No text annotation | ||
J4_4V6P_008 | 1/BB/601:604, 1/BB/624:628, 1/BB/635:638, 1/BB/650:656 | No text annotation | ||
J4_4V6P_009 | 1/BB/1270:1276, 1/BB/1294:1295, 1/BB/1645:1648, 1/BB/2009:2010 | No text annotation | homologous J4_9DFE_003 J4_64571.5 | |
J4_4V6P_010 | 1/BB/1310:1314, 1/BB/1338:1343, 1/BB/1404:1405, 1/BB/1597:1604 | No text annotation | homologous J4_4WF9_005 J4_69051.6 | |
J4_4V6P_011 | 1/BB/1313:1314, 1/BB/1338:1343, 1/BB/1404:1405, 1/BB/1597:1603 | No text annotation | homologous J4_4WF9_006 J4_10313.5 | |
J4_4V6P_012 | 1/BB/1444:1445, 1/BB/1466:1467, 1/BB/1525:1526, 1/BB/1546:1547 | No text annotation | homologous J4_5J7L_024 J4_24280.2 | |
J4_4V6P_013 | 1/BB/1772:1776, 1/BB/1788:1792, 1/BB/1827:1830, 1/BB/1975:1979 | No text annotation | homologous J4_7A0S_008 J4_61477.5 | |
J4_4V6P_014 | 1/BB/1833:1835, 1/BB/1905:1906, 1/BB/1924:1933, 1/BB/1967:1972 | No text annotation | homologous J4_9DFE_008 J4_93343.1 | |
J4_4V6P_015 | 1/BB/2643:2646, 1/BB/2674:2676, 1/BB/2731:2735, 1/BB/2769:2771 | No text annotation | homologous J4_4WF9_009 J4_77044.4 | |
J5_4V6P_001 | 1/AA/36:39, 1/AA/403:406, 1/AA/436:440, 1/AA/497:500, 1/AA/545:548 | No text annotation | ||
J5_4V6P_002 | 1/AA/36:39, 1/AA/403:406, 1/AA/436:442, 1/AA/492:500, 1/AA/545:548 | No text annotation | ||
J5_4V6P_003 | 1/AA/58:61, 1/AA/106:113, 1/AA/314:316, 1/AA/337:339, 1/AA/350:354 | No text annotation | homologous J5_5J7L_003 J5_59910.6 | |
J5_4V6P_004 | 1/BB/47:54, 1/BB/116:121, 1/BB/130:131, 1/BB/148:150, 1/BB/176:178 | No text annotation | homologous J5_5J7L_013 J5_01737.2 | |
J5_4V6P_005 | 1/BB/531:533, 1/BB/560:564, 1/BB/577:579, 1/BB/1261:1262, 1/BB/2017:2018 | No text annotation | homologous J5_9DFE_003 J5_43153.5 | |
J5_4V6P_011 | 1/BB/584:589, 1/BB/668:671, 1/BB/809:812, 1/BB/1195:1196, 1/BB/1250:1256 | No text annotation | homologous J5_9DFE_004 J5_74302.5 | |
J5_4V6P_007 | 1/BB/1674:1682, 1/BB/1706:1707, 1/BB/1751:1752, 1/BB/1756:1764, 1/BB/1988:1990 | No text annotation | ||
J5_4V6P_008 | 1/BB/2057:2064, 1/BB/2446:2454, 1/BB/2498:2508, 1/BB/2580:2588, 1/BB/2606:2611 | No text annotation | ||
J5_4V6P_009 | 1/BB/2074:2077, 1/BB/2243:2248, 1/BB/2256:2259, 1/BB/2281:2282, 1/BB/2427:2435 | No text annotation | ||
J5_4V6P_012 | 1/BB/2282:2289, 1/BB/2343:2347, 1/BB/2370:2373, 1/BB/2380:2395, 1/BB/2421:2427 | No text annotation | ||
J6_4V6P_001 | 1/BB/45:46, 1/BB/179:183, 1/BB/214:224, 1/BB/231:235, 1/BB/262:266, 1/BB/426:433 | No text annotation | ||
J7_4V6P_003 | 1/BB/8:15, 1/BB/525:531, 1/BB/2018:2023, 1/BB/2040:2043, 1/BB/2625:2630, 1/BB/2788:2789, 1/BB/2894:2895 | No text annotation | ||
J7_4V6P_002 | 1/BB/817:822, 1/BB/835:838, 1/BB/940:946, 1/BB/971:976, 1/BB/987:991, 1/BB/1163:1164, 1/BB/1185:1190 | No text annotation |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
J3_4V6P_001 | No text annotation | ||
J3_4V6P_009 | No text annotation | ||
J3_4V6P_030 | No text annotation | ||
J3_4V6P_022 | No text annotation | ||
J3_4V6P_037 | No text annotation | ||
J3_4V6P_024 | No text annotation | ||
J4_4V6P_001 | No text annotation | ||
J4_4V6P_004 | No text annotation | ||
J5_4V6P_006 | No text annotation | ||
J5_4V6P_010 | No text annotation | ||
J7_4V6P_001 | No text annotation |
Coloring options: