HL_4V6P_009

3D structure

PDB id

4V6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4b of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

13.5 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6P_009 not in the Motif Atlas

Homologous match to HL_4LFB_009

Geometric discrepancy: 0.5212

The information below is about HL_4LFB_009

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

4V6P|1|AA|C|342
4V6P|1|AA|U|343
4V6P|1|AA|A|344
4V6P|1|AA|C|345
4V6P|1|AA|G|346
4V6P|1|AA|G|347

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain BM

50S ribosomal protein L14

Chain BR

50S ribosomal protein L19