3D structure

PDB id
4V6P (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structural characterization of mRNA-tRNA translocation intermediates (class 4b of the six classes)
Experimental method
ELECTRON MICROSCOPY
Resolution
13.5 Å

Loop

Sequence
GCAGCC(7MG)C
Length
8 nucleotides
Bulged bases
None detected
QA status
Modified nucleotides: 7MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4V6P_013 not in the Motif Atlas
Homologous match to HL_5J7L_013
Geometric discrepancy: 0.3607
The information below is about HL_5J7L_013
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

4V6P|1|AA|G|521
4V6P|1|AA|C|522
4V6P|1|AA|A|523
4V6P|1|AA|G|524
4V6P|1|AA|C|525
4V6P|1|AA|C|526
4V6P|1|AA|7MG|527
4V6P|1|AA|C|528

Current chains

Chain AA
16S ribosomal RNA

Nearby chains

Chain AO
30S ribosomal protein S12

Coloring options:


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