3D structure

PDB id
4V6P (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structural characterization of mRNA-tRNA translocation intermediates (class 4b of the six classes)
Experimental method
ELECTRON MICROSCOPY
Resolution
13.5 Å

Loop

Sequence
G(2MG)G(MA6)(MA6)C
Length
6 nucleotides
Bulged bases
4V6P|1|AA|G|1517
QA status
Modified nucleotides: 2MG, MA6

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4V6P_032 not in the Motif Atlas
Homologous match to HL_6CZR_103
Geometric discrepancy: 0.1462
The information below is about HL_6CZR_103
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.6
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
360

Unit IDs

4V6P|1|AA|G|1515
4V6P|1|AA|2MG|1516
4V6P|1|AA|G|1517
4V6P|1|AA|MA6|1518
4V6P|1|AA|MA6|1519
4V6P|1|AA|C|1520

Current chains

Chain AA
16S ribosomal RNA

Nearby chains

Chain AN
30S ribosomal protein S11
Chain BB
Large subunit ribosomal RNA; LSU rRNA

Coloring options:


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