HL_4V6P_036

3D structure

PDB id

4V6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4b of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

13.5 Å

Loop

Sequence

CAGCCUGG(H2U)AG

Length

11 nucleotides

Bulged bases

4V6P|1|AD|C|17, 4V6P|1|AD|U|18, 4V6P|1|AD|G|19, 4V6P|1|AD|G|20

QA status

Modified nucleotides: H2U

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6P_036 not in the Motif Atlas

Homologous match to HL_6JXM_001

Geometric discrepancy: 0.2382

The information below is about HL_6JXM_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20811.4

Basepair signature

cWW-cWS-F

Number of instances in this motif group

14

Unit IDs

4V6P|1|AD|C|13
4V6P|1|AD|A|14
4V6P|1|AD|G|15
4V6P|1|AD|C|16
4V6P|1|AD|C|17
4V6P|1|AD|U|18
4V6P|1|AD|G|19
4V6P|1|AD|G|20
4V6P|1|AD|H2U|21
4V6P|1|AD|A|22
4V6P|1|AD|G|23

Current chains

Chain AD

P site tRNA

Nearby chains