HL_4V6P_037
3D structure
- PDB id
- 4V6P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structural characterization of mRNA-tRNA translocation intermediates (class 4b of the six classes)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 13.5 Å
Loop
- Sequence
- G(OMC)UCAUAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V6P_037 not in the Motif Atlas
- Homologous match to HL_6PMO_004
- Geometric discrepancy: 0.2596
- The information below is about HL_6PMO_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V6P|1|AD|G|32
4V6P|1|AD|OMC|33
4V6P|1|AD|U|34
4V6P|1|AD|C|35
4V6P|1|AD|A|36
4V6P|1|AD|U|37
4V6P|1|AD|A|38
4V6P|1|AD|A|39
4V6P|1|AD|C|40
Current chains
- Chain AD
- P site tRNA
Nearby chains
- Chain AA
- Small subunit ribosomal RNA; SSU rRNA
- Chain AC
- mRNA
- Chain AL
- 30S ribosomal protein S9
- Chain AP
- 30S ribosomal protein S13
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