HL_4V6P_063

3D structure

PDB id

4V6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4b of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

13.5 Å

Loop

Sequence

UGAAAGG

Length

7 nucleotides

Bulged bases

4V6P|1|BB|A|781, 4V6P|1|BB|G|784

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6P_063 not in the Motif Atlas

Geometric match to HL_1P6V_001

Geometric discrepancy: 0.2965

The information below is about HL_1P6V_001

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_53890.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

15

Unit IDs

4V6P|1|BB|U|779
4V6P|1|BB|G|780
4V6P|1|BB|A|781
4V6P|1|BB|A|782
4V6P|1|BB|A|783
4V6P|1|BB|G|784
4V6P|1|BB|G|785

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain BD

50S ribosomal protein L2