HL_4V6P_068

3D structure

PDB id

4V6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4b of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

13.5 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6P_068 not in the Motif Atlas

Homologous match to HL_5J7L_161

Geometric discrepancy: 0.3624

The information below is about HL_5J7L_161

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

4V6P|1|BB|C|1064
4V6P|1|BB|U|1065
4V6P|1|BB|U|1066
4V6P|1|BB|A|1067
4V6P|1|BB|G|1068
4V6P|1|BB|A|1069
4V6P|1|BB|A|1070
4V6P|1|BB|G|1071
4V6P|1|BB|C|1072
4V6P|1|BB|A|1073
4V6P|1|BB|G|1074

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain BH

50S ribosomal protein L6

Chain BK

50S ribosomal protein L11