HL_4V6P_093

3D structure

PDB id

4V6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4b of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

13.5 Å

Loop

Sequence

CUG(OMG)GGCGG

Length

9 nucleotides

Bulged bases

4V6P|1|BB|G|2250

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6P_093 not in the Motif Atlas

Homologous match to HL_7RQB_053

Geometric discrepancy: 0.4656

The information below is about HL_7RQB_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6P|1|BB|C|2248
4V6P|1|BB|U|2249
4V6P|1|BB|G|2250
4V6P|1|BB|OMG|2251
4V6P|1|BB|G|2252
4V6P|1|BB|G|2253
4V6P|1|BB|C|2254
4V6P|1|BB|G|2255
4V6P|1|BB|G|2256

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain BO

50S ribosomal protein L16

Chain BY

50S ribosomal protein L27