HL_4V6P_098
3D structure
- PDB id
- 4V6P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structural characterization of mRNA-tRNA translocation intermediates (class 4b of the six classes)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 13.5 Å
Loop
- Sequence
- CGAAAG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V6P_098 not in the Motif Atlas
- Homologous match to HL_4WF9_054
- Geometric discrepancy: 0.4037
- The information below is about HL_4WF9_054
- Detailed Annotation
- GNRA
- Broad Annotation
- No text annotation
- Motif group
- HL_34789.1
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 335
Unit IDs
4V6P|1|BB|C|2374
4V6P|1|BB|G|2375
4V6P|1|BB|A|2376
4V6P|1|BB|A|2377
4V6P|1|BB|A|2378
4V6P|1|BB|G|2379
Current chains
- Chain BB
- 23S ribomosomal RNA
Nearby chains
- Chain B2
- 50S ribosomal protein L31
- Chain B4
- 50S ribosomal protein L33
- Chain BA
- 5S ribosomal RNA; 5S rRNA
- Chain BQ
- 50S ribosomal protein L18
- Chain BY
- 50S ribosomal protein L27
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